A list of segmentation tasks. More...

#include <mitkSegmentationTaskList.h>

Inheritance diagram for mitk::SegmentationTaskList:

[legend]

Collaboration diagram for mitk::SegmentationTaskList:

[legend]

Classes
class	Task

Public Member Functions
	mitkClassMacro (SegmentationTaskList, BaseData) static Pointer New()

Pointer	Clone () const

bool	HasName (size_t index) const

std::string	GetName (size_t index) const

void	SetDefaultName (const std::string &value)

bool	HasDescription (size_t index) const

std::string	GetDescription (size_t index) const

void	SetDefaultDescription (const std::string &value)

bool	HasImage (size_t index) const

std::filesystem::path	GetImage (size_t index) const

void	SetDefaultImage (const std::filesystem::path &value)

bool	HasSegmentation (size_t index) const

std::filesystem::path	GetSegmentation (size_t index) const

void	SetDefaultSegmentation (const std::filesystem::path &value)

bool	HasLabelName (size_t index) const

std::string	GetLabelName (size_t index) const

void	SetDefaultLabelName (const std::string &value)

bool	HasLabelNameSuggestions (size_t index) const

std::filesystem::path	GetLabelNameSuggestions (size_t index) const

void	SetDefaultLabelNameSuggestions (const std::filesystem::path &value)

bool	HasPreset (size_t index) const

std::filesystem::path	GetPreset (size_t index) const

void	SetDefaultPreset (const std::filesystem::path &value)

bool	HasResult (size_t index) const

std::filesystem::path	GetResult (size_t index) const

void	SetDefaultResult (const std::filesystem::path &value)

bool	HasDynamic (size_t index) const

bool	GetDynamic (size_t index) const

void	SetDefaultDynamic (const bool &value)

size_t	GetNumberOfTasks () const

size_t	AddTask (const Task &subtask)

const Task *	GetTask (size_t index) const

Task *	GetTask (size_t index)

const Task &	GetDefaults () const

void	SetDefaults (const Task &defaults)

bool	IsDone () const

bool	IsDone (size_t index) const

std::filesystem::path	GetInputLocation () const

std::filesystem::path	GetBasePath () const

std::filesystem::path	GetAbsolutePath (const std::filesystem::path &path) const

std::filesystem::path	GetInterimPath (const std::filesystem::path &path) const

void	SaveTask (size_t index, const BaseData *segmentation, bool saveAsInterimResult=false)

std::vector< Task >::const_iterator	begin () const

std::vector< Task >::const_iterator	end () const

std::vector< Task >::iterator	begin ()

std::vector< Task >::iterator	end ()

void	SetRequestedRegionToLargestPossibleRegion () override
	Set the RequestedRegion to the LargestPossibleRegion. More...

bool	RequestedRegionIsOutsideOfTheBufferedRegion () override
	Determine whether the RequestedRegion is outside of the BufferedRegion. More...

bool	VerifyRequestedRegion () override
	Verify that the RequestedRegion is within the LargestPossibleRegion. More...

void	SetRequestedRegion (const itk::DataObject *) override
	Set the requested region from this data object to match the requested region of the data object passed in as a parameter. More...

Public Member Functions inherited from mitk::BaseData
virtual std::vector< std::string >	GetClassHierarchy () const

virtual const char *	GetClassName () const

BaseProperty::ConstPointer	GetConstProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=true) const override
	Get property by its key. More...

std::vector< std::string >	GetPropertyKeys (const std::string &contextName="", bool includeDefaultContext=false) const override
	Query keys of existing properties. More...

std::vector< std::string >	GetPropertyContextNames () const override
	Query names of existing contexts. More...

BaseProperty *	GetNonConstProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=true) override
	Get property by its key. More...

void	SetProperty (const std::string &propertyKey, BaseProperty *property, const std::string &contextName="", bool fallBackOnDefaultContext=false) override
	Add new or change existent property. More...

void	RemoveProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=false) override
	Removes a property. If the property does not exist, nothing will be done. More...

const mitk::TimeGeometry *	GetTimeGeometry () const
	Return the TimeGeometry of the data as const pointer. More...

mitk::TimeGeometry *	GetTimeGeometry ()
	Return the TimeGeometry of the data as pointer. More...

const mitk::TimeGeometry *	GetUpdatedTimeGeometry ()
	Return the TimeGeometry of the data. More...

virtual void	Expand (unsigned int timeSteps)
	Expands the TimeGeometry to a number of TimeSteps. More...

const mitk::BaseGeometry *	GetUpdatedGeometry (int t=0)
	Return the BaseGeometry of the data at time t. More...

mitk::BaseGeometry *	GetGeometry (int t=0) const
	Return the geometry, which is a TimeGeometry, of the data as non-const pointer. More...

void	UpdateOutputInformation () override
	Update the information for this BaseData (the geometry in particular) so that it can be used as an output of a BaseProcess. More...

void	CopyInformation (const itk::DataObject *data) override
	Copy information from the specified data set. More...

virtual bool	IsInitialized () const
	Check whether the data has been initialized, i.e., at least the Geometry and other header data has been set. More...

virtual void	Clear ()
	Calls ClearData() and InitializeEmpty();. More...

virtual bool	IsEmptyTimeStep (unsigned int t) const
	Check whether object contains data (at a specified time), e.g., a set of points may be empty. More...

virtual bool	IsEmpty () const
	Check whether object contains data (at least at one point in time), e.g., a set of points may be empty. More...

void	ExecuteOperation (Operation *operation) override
	overwrite if the Data can be called by an Interactor (StateMachine). More...

virtual void	SetGeometry (BaseGeometry *aGeometry3D)
	Set the BaseGeometry of the data, which will be referenced (not copied!). Assumes the data object has only 1 time step ( is a 3D object ) and creates a new TimeGeometry which saves the given BaseGeometry. If an TimeGeometry has already been set for the object, it will be replaced after calling this function. More...

virtual void	SetTimeGeometry (TimeGeometry *geometry)
	Set the TimeGeometry of the data, which will be referenced (not copied!). More...

virtual void	SetClonedGeometry (const BaseGeometry *aGeometry3D)
	Set a clone of the provided Geometry as Geometry of the data. Assumes the data object has only 1 time step ( is a 3D object ) and creates a new TimeGeometry. If an TimeGeometry has already been set for the object, it will be replaced after calling this function. More...

virtual void	SetClonedTimeGeometry (const TimeGeometry *geometry)
	Set a clone of the provided TimeGeometry as TimeGeometry of the data. More...

virtual void	SetClonedGeometry (const BaseGeometry *aGeometry3D, unsigned int time)
	Set a clone of the provided geometry as BaseGeometry of a given time step. More...

mitk::PropertyList::Pointer	GetPropertyList () const
	Get the data's property list. More...

void	SetPropertyList (PropertyList *propertyList)
	Set the data's property list. More...

mitk::BaseProperty::Pointer	GetProperty (const char *propertyKey) const
	Get the property (instance of BaseProperty) with key propertyKey from the PropertyList, and set it to this, respectively;. More...

void	SetProperty (const char propertyKey, BaseProperty property)

virtual void	SetOrigin (const Point3D &origin)
	Convenience method for setting the origin of the BaseGeometry instances of all time steps. More...

itk::SmartPointer< mitk::BaseDataSource >	GetSource () const
	Get the process object that generated this data object. More...

unsigned int	GetTimeSteps () const
	Get the number of time steps from the TimeGeometry As the base data has not a data vector given by itself, the number of time steps is defined over the time sliced geometry. In sub classes, a better implementation could be over the length of the data vector. More...

itk::ModifiedTimeType	GetMTime () const override
	Get the modified time of the last change of the contents this data object or its geometry. More...

void	Graft (const DataObject *) override

Public Member Functions inherited from mitk::OperationActor
	itkTypeMacroNoParent (OperationActor) virtual ~OperationActor()

Public Member Functions inherited from mitk::Identifiable
	Identifiable ()

	Identifiable (const UIDType &uid)

	Identifiable (const Identifiable &)=delete

	Identifiable (Identifiable &&) noexcept

virtual	~Identifiable ()

Identifiable &	operator= (const Identifiable &)=delete

Identifiable &	operator= (Identifiable &&other) noexcept

virtual UIDType	GetUID () const
	Get unique ID of an object. More...

Public Member Functions inherited from mitk::IPropertyOwner
	~IPropertyOwner () override

Public Member Functions inherited from mitk::IPropertyProvider
virtual	~IPropertyProvider ()

Protected Member Functions
	mitkCloneMacro (Self) SegmentationTaskList()

	SegmentationTaskList (const Self &other)

	~SegmentationTaskList () override

Protected Member Functions inherited from mitk::BaseData
	BaseData ()

	BaseData (const BaseData &other)

	~BaseData () override

virtual void	InitializeTimeGeometry (unsigned int timeSteps=1)
	Initialize the TimeGeometry for a number of time steps. The TimeGeometry is initialized empty and evenly timed. In many cases it will be necessary to overwrite this in sub-classes. More...

virtual void	ClearData ()
	reset to non-initialized state, release memory More...

virtual void	InitializeEmpty ()
	Pure virtual; Must be used in subclasses to get a data object to a valid state. Should at least create one empty object and call Superclass::InitializeTimeGeometry() to ensure an existing valid geometry. More...

void	PrintSelf (std::ostream &os, itk::Indent indent) const override

Protected Member Functions inherited from mitk::Identifiable
virtual void	SetUID (const UIDType &uid)

Additional Inherited Members
Public Types inherited from mitk::BaseData
typedef BaseData	Self

typedef itk::DataObject	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

Public Types inherited from mitk::Identifiable
using	UIDType = std::string

Static Public Member Functions inherited from mitk::BaseData
static const char *	GetStaticNameOfClass ()

Protected Attributes inherited from mitk::BaseData
bool	m_LastRequestedRegionWasOutsideOfTheBufferedRegion

unsigned int	m_SourceOutputIndexDuplicate

bool	m_Initialized

Detailed Description

A list of segmentation tasks.

See MITK Segmentation Task Lists for more information.

Definition at line 30 of file mitkSegmentationTaskList.h.

Constructor & Destructor Documentation

◆ SegmentationTaskList()

mitk::SegmentationTaskList::SegmentationTaskList ( const Self & other )

protected

◆ ~SegmentationTaskList()

mitk::SegmentationTaskList::~SegmentationTaskList ( )

overrideprotected

Member Function Documentation

◆ AddTask()

size_t mitk::SegmentationTaskList::AddTask ( const Task & subtask )

◆ begin() [1/2]

std::vector<Task>::iterator mitk::SegmentationTaskList::begin ( )

◆ begin() [2/2]

std::vector<Task>::const_iterator mitk::SegmentationTaskList::begin ( ) const

◆ Clone()

Pointer mitk::SegmentationTaskList::Clone ( ) const

◆ end() [1/2]

std::vector<Task>::iterator mitk::SegmentationTaskList::end ( )

◆ end() [2/2]

std::vector<Task>::const_iterator mitk::SegmentationTaskList::end ( ) const

◆ GetAbsolutePath()

std::filesystem::path mitk::SegmentationTaskList::GetAbsolutePath ( const std::filesystem::path & path ) const

◆ GetBasePath()

std::filesystem::path mitk::SegmentationTaskList::GetBasePath ( ) const

◆ GetDefaults()

const Task& mitk::SegmentationTaskList::GetDefaults ( ) const

◆ GetDescription()

std::string mitk::SegmentationTaskList::GetDescription ( size_t index ) const

◆ GetDynamic()

bool mitk::SegmentationTaskList::GetDynamic ( size_t index ) const

◆ GetImage()

std::filesystem::path mitk::SegmentationTaskList::GetImage ( size_t index ) const

◆ GetInputLocation()

std::filesystem::path mitk::SegmentationTaskList::GetInputLocation ( ) const

◆ GetInterimPath()

std::filesystem::path mitk::SegmentationTaskList::GetInterimPath ( const std::filesystem::path & path ) const

◆ GetLabelName()

std::string mitk::SegmentationTaskList::GetLabelName ( size_t index ) const

◆ GetLabelNameSuggestions()

std::filesystem::path mitk::SegmentationTaskList::GetLabelNameSuggestions ( size_t index ) const

◆ GetName()

std::string mitk::SegmentationTaskList::GetName ( size_t index ) const

◆ GetNumberOfTasks()

size_t mitk::SegmentationTaskList::GetNumberOfTasks ( ) const

◆ GetPreset()

std::filesystem::path mitk::SegmentationTaskList::GetPreset ( size_t index ) const

◆ GetResult()

std::filesystem::path mitk::SegmentationTaskList::GetResult ( size_t index ) const

◆ GetSegmentation()

std::filesystem::path mitk::SegmentationTaskList::GetSegmentation ( size_t index ) const

◆ GetTask() [1/2]

Task* mitk::SegmentationTaskList::GetTask ( size_t index )

◆ GetTask() [2/2]

const Task* mitk::SegmentationTaskList::GetTask ( size_t index ) const

◆ HasDescription()

bool mitk::SegmentationTaskList::HasDescription ( size_t index ) const

◆ HasDynamic()

bool mitk::SegmentationTaskList::HasDynamic ( size_t index ) const

◆ HasImage()

bool mitk::SegmentationTaskList::HasImage ( size_t index ) const

◆ HasLabelName()

bool mitk::SegmentationTaskList::HasLabelName ( size_t index ) const

◆ HasLabelNameSuggestions()

bool mitk::SegmentationTaskList::HasLabelNameSuggestions ( size_t index ) const

◆ HasName()

bool mitk::SegmentationTaskList::HasName ( size_t index ) const

◆ HasPreset()

bool mitk::SegmentationTaskList::HasPreset ( size_t index ) const

◆ HasResult()

bool mitk::SegmentationTaskList::HasResult ( size_t index ) const

◆ HasSegmentation()

bool mitk::SegmentationTaskList::HasSegmentation ( size_t index ) const

◆ IsDone() [1/2]

bool mitk::SegmentationTaskList::IsDone ( ) const

◆ IsDone() [2/2]

bool mitk::SegmentationTaskList::IsDone ( size_t index ) const

◆ mitkClassMacro()

mitk::SegmentationTaskList::mitkClassMacro	(	SegmentationTaskList	,
		BaseData
	)

◆ mitkCloneMacro()

mitk::SegmentationTaskList::mitkCloneMacro ( Self )

protected

◆ RequestedRegionIsOutsideOfTheBufferedRegion()

bool mitk::SegmentationTaskList::RequestedRegionIsOutsideOfTheBufferedRegion ( )

overridevirtual

Determine whether the RequestedRegion is outside of the BufferedRegion.

This method returns true if the RequestedRegion is outside the BufferedRegion (true if at least one pixel is outside). This is used by the pipeline mechanism to determine whether a filter needs to re-execute in order to satisfy the current request. If the current RequestedRegion is already inside the BufferedRegion from the previous execution (and the current filter is up to date), then a given filter does not need to re-execute

Implements mitk::BaseData.

◆ SaveTask()

void mitk::SegmentationTaskList::SaveTask	(	size_t	index,
		const BaseData *	segmentation,
		bool	saveAsInterimResult = `false`
	)

◆ SetDefaultDescription()

void mitk::SegmentationTaskList::SetDefaultDescription ( const std::string & value )

◆ SetDefaultDynamic()

void mitk::SegmentationTaskList::SetDefaultDynamic ( const bool & value )

◆ SetDefaultImage()

void mitk::SegmentationTaskList::SetDefaultImage ( const std::filesystem::path & value )

◆ SetDefaultLabelName()

void mitk::SegmentationTaskList::SetDefaultLabelName ( const std::string & value )

◆ SetDefaultLabelNameSuggestions()

void mitk::SegmentationTaskList::SetDefaultLabelNameSuggestions ( const std::filesystem::path & value )

◆ SetDefaultName()

void mitk::SegmentationTaskList::SetDefaultName ( const std::string & value )

◆ SetDefaultPreset()

void mitk::SegmentationTaskList::SetDefaultPreset ( const std::filesystem::path & value )

◆ SetDefaultResult()

void mitk::SegmentationTaskList::SetDefaultResult ( const std::filesystem::path & value )

◆ SetDefaults()

void mitk::SegmentationTaskList::SetDefaults ( const Task & defaults )

◆ SetDefaultSegmentation()

void mitk::SegmentationTaskList::SetDefaultSegmentation ( const std::filesystem::path & value )

◆ SetRequestedRegion()

void mitk::SegmentationTaskList::SetRequestedRegion ( const itk::DataObject * data )

overridevirtual

Set the requested region from this data object to match the requested region of the data object passed in as a parameter.

This method is implemented in the concrete subclasses of BaseData.

Implements mitk::BaseData.

◆ SetRequestedRegionToLargestPossibleRegion()

void mitk::SegmentationTaskList::SetRequestedRegionToLargestPossibleRegion ( )

overridevirtual

Set the RequestedRegion to the LargestPossibleRegion.

This forces a filter to produce all of the output in one execution (i.e. not streaming) on the next call to Update().

Implements mitk::BaseData.

◆ VerifyRequestedRegion()

bool mitk::SegmentationTaskList::VerifyRequestedRegion ( )

overridevirtual

Verify that the RequestedRegion is within the LargestPossibleRegion.

If the RequestedRegion is not within the LargestPossibleRegion, then the filter cannot possibly satisfy the request. This method returns true if the request can be satisfied (even if it will be necessary to process the entire LargestPossibleRegion) and returns false otherwise. This method is used by PropagateRequestedRegion(). PropagateRequestedRegion() throws a InvalidRequestedRegionError exception if the requested region is not within the LargestPossibleRegion.

Implements mitk::BaseData.

The documentation for this class was generated from the following file:

mitkSegmentationTaskList.h

Classes

Public Member Functions

Protected Member Functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ SegmentationTaskList()

◆ ~SegmentationTaskList()

Member Function Documentation

◆ AddTask()

◆ begin() [1/2]

◆ begin() [2/2]

◆ Clone()

◆ end() [1/2]

◆ end() [2/2]

◆ GetAbsolutePath()

◆ GetBasePath()

◆ GetDefaults()

◆ GetDescription()

◆ GetDynamic()

◆ GetImage()

◆ GetInputLocation()

◆ GetInterimPath()

◆ GetLabelName()

◆ GetLabelNameSuggestions()

◆ GetName()

◆ GetNumberOfTasks()

◆ GetPreset()

◆ GetResult()

◆ GetSegmentation()

◆ GetTask() [1/2]

◆ GetTask() [2/2]

◆ HasDescription()

◆ HasDynamic()

◆ HasImage()

◆ HasLabelName()

◆ HasLabelNameSuggestions()

◆ HasName()

◆ HasPreset()

◆ HasResult()

◆ HasSegmentation()

◆ IsDone() [1/2]

◆ IsDone() [2/2]

◆ mitkClassMacro()

◆ mitkCloneMacro()

◆ RequestedRegionIsOutsideOfTheBufferedRegion()

◆ SaveTask()

◆ SetDefaultDescription()

◆ SetDefaultDynamic()

◆ SetDefaultImage()

◆ SetDefaultLabelName()

◆ SetDefaultLabelNameSuggestions()

◆ SetDefaultName()

◆ SetDefaultPreset()

◆ SetDefaultResult()

◆ SetDefaults()

◆ SetDefaultSegmentation()

◆ SetRequestedRegion()

◆ SetRequestedRegionToLargestPossibleRegion()

◆ VerifyRequestedRegion()