QmitkImageStatisticsCalculationRunnable.h

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/*============================================================================
 
The Medical Imaging Interaction Toolkit (MITK)
 
Copyright (c) German Cancer Research Center (DKFZ)
All rights reserved.
 
Use of this source code is governed by a 3-clause BSD license that can be
found in the LICENSE file.
 
============================================================================*/
#ifndef QmitkImageStatisticsCalculationRunnable_h
#define QmitkImageStatisticsCalculationRunnable_h
 
//mitk headers
#include "mitkImage.h"
#include "mitkPlanarFigure.h"
#include "mitkImageStatisticsContainer.h"
 
#include "QmitkDataGenerationJobBase.h"
 
// itk headers
#ifndef __itkHistogram_h
#include <itkHistogram.h>
#endif
 
#include <MitkImageStatisticsUIExports.h>
 
class MITKIMAGESTATISTICSUI_EXPORT QmitkImageStatisticsCalculationRunnable : public QmitkDataGenerationJobBase
{
  Q_OBJECT
public:
 
  typedef itk::Statistics::Histogram<double> HistogramType;
 
  QmitkImageStatisticsCalculationRunnable();
  ~QmitkImageStatisticsCalculationRunnable();
 
  void Initialize(const mitk::Image* image, const mitk::Image* binaryImage, const mitk::PlanarFigure* planarFig);
  mitk::ImageStatisticsContainer* GetStatisticsData() const;
 
  const mitk::Image* GetStatisticsImage() const;
  const mitk::Image* GetMaskImage() const;
  const mitk::PlanarFigure* GetPlanarFigure() const;
 
  void SetIgnoreZeroValueVoxel(bool _arg);
  bool GetIgnoreZeroValueVoxel() const;
  void SetHistogramNBins(unsigned int nbins);
  unsigned int GetHistogramNBins() const;
 
  ResultMapType GetResults() const override;
 
protected:
  bool RunComputation() override;
 
private:
  mitk::Image::ConstPointer m_StatisticsImage;                         
  mitk::Image::ConstPointer m_BinaryMask;                              
  mitk::PlanarFigure::ConstPointer m_PlanarFigureMask;                 
  mitk::ImageStatisticsContainer::Pointer m_StatisticsContainer;
  bool m_IgnoreZeros;                                             
  unsigned int m_HistogramNBins;                                      
};
#endif