2023.04/QmitkImageStatisticsCalculationJob_8h_source.html

/*============================================================================


The Medical Imaging Interaction Toolkit (MITK)


Copyright (c) German Cancer Research Center (DKFZ)

All rights reserved.


Use of this source code is governed by a 3-clause BSD license that can be

found in the LICENSE file.


============================================================================*/

#ifndef QmitkImageStatisticsCalculationJob_h

#define QmitkImageStatisticsCalculationJob_h


//QT headers

#include <QThread>


//mitk headers

#include "mitkImage.h"

#include "mitkPlanarFigure.h"

#include "mitkImageStatisticsContainer.h"

#include <MitkImageStatisticsUIExports.h>


// itk headers

#ifndef __itkHistogram_h

#include <itkHistogram.h>

#endif


class MITKIMAGESTATISTICSUI_EXPORT QmitkImageStatisticsCalculationJob : public QThread

{

  Q_OBJECT


public:


  typedef itk::Statistics::Histogram<double> HistogramType;


  QmitkImageStatisticsCalculationJob();

  ~QmitkImageStatisticsCalculationJob() override;


  void Initialize(const mitk::Image* image, const mitk::Image* binaryImage, const mitk::PlanarFigure* planarFig );

  mitk::ImageStatisticsContainer* GetStatisticsData() const;


  const mitk::Image* GetStatisticsImage() const;

  const mitk::Image* GetMaskImage() const;

  const mitk::PlanarFigure* GetPlanarFigure() const;


  void SetIgnoreZeroValueVoxel( bool _arg );

  bool GetIgnoreZeroValueVoxel() const;

  void SetHistogramNBins( unsigned int nbins);

  unsigned int GetHistogramNBins() const;

  const HistogramType* GetTimeStepHistogram(unsigned int t = 0) const;


  bool GetStatisticsUpdateSuccessFlag() const;

  void run() override;


  std::string GetLastErrorMessage() const;


private:

  mitk::Image::ConstPointer m_StatisticsImage;

  mitk::Image::ConstPointer m_BinaryMask;

  mitk::PlanarFigure::ConstPointer m_PlanarFigureMask;

  mitk::ImageStatisticsContainer::Pointer m_StatisticsContainer;

  bool m_IgnoreZeros;

  unsigned int m_HistogramNBins;

  bool m_CalculationSuccessful;

  std::vector<HistogramType::ConstPointer> m_HistogramVector;

  std::string m_message;

};

#endif