AccessLikelihoodCache(typename InputDWIImageType::IndexType index) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
bValueContainerType typedef | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | |
bValueType typedef | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | |
CalculateConstrainedModelParameters(const TensorModelParamType &tensormodelparams, ConstrainedModelParamType &constrainedmodelparams) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
CalculateLikelihood(const DWIVectorImageType::PixelType &dwipixel, TractOrientationContainerType::ConstPointer orientations, ProbabilityDistributionImageType::PixelType &likelihood) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
CalculateNoiseFreeDWIFromConstrainedModel(const ConstrainedModelParamType &constrainedmodelparams, DWIVectorImageType::PixelType &noisefreedwi) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
CalculatePosterior(const ProbabilityDistributionImageType::PixelType &likelihood, const ProbabilityDistributionImageType::PixelType &prior, ProbabilityDistributionImageType::PixelType &posterior) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
CalculatePrior(TractOrientationContainerType::Element v_prev, TractOrientationContainerType::ConstPointer orientations, ProbabilityDistributionImageType::PixelType &prior) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
CalculateResidualVariance(const DWIVectorImageType::PixelType &noisydwi, const DWIVectorImageType::PixelType &noisefreedwi, const vnl_diag_matrix< double > &W, const unsigned int numberofparameters, double &residualvariance) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
CalculateTensorModelParameters(const DWIVectorImageType::PixelType &dwivalues, vnl_diag_matrix< double > &W, TensorModelParamType &tensormodelparams) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
Clone() const | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | |
ConstPointer typedef | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | |
ConstrainedModelParamType typedef | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
DelegateTract(unsigned long &randomseed) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
DWIVectorImageType typedef | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
FiberExistenceTest(vnl_random &randomgenerator, typename InputWhiteMatterProbabilityImageType::ConstPointer wmpimage, typename InputWhiteMatterProbabilityImageType::IndexType index) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
GenerateData() | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | |
GenerateTensorImageOutput(void) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | |
GenerateTractContainerOutput(void) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | |
GetbValues() | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | virtual |
GetClassName() const | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | virtual |
GetGradients() | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | virtual |
GetMaxLikelihoodCacheSize() | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | virtual |
GetMaxTractLength() | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | virtual |
GetMeasurementFrame() | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | virtual |
GetOutputTensorImage() | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | virtual |
GetOutputTractContainer() | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | virtual |
GetSampleDirections() | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | virtual |
GetSeedIndex() | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | virtual |
GetTotalTracts() | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | virtual |
GradientDirectionContainerType typedef | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | |
InputDWIImageType typedef | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | |
InputWhiteMatterProbabilityImageType typedef | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | |
itkSetInputMacro(WhiteMatterProbabilityImage, InputWhiteMatterProbabilityImageType) itkGetInputMacro(WhiteMatterProbabilityImage | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | |
LikelihoodCacheMutexImageType typedef | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
LoadDefaultSampleDirections(void) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
m_A | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
m_Aqr | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
m_bValues | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
m_ClockPtr | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
m_CurrentLikelihoodCacheElements | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
m_Gradients | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
m_LikelihoodCacheMutex | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
m_LikelihoodCacheMutexImagePtr | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
m_LikelihoodCachePtr | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
m_MaxLikelihoodCacheElements | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
m_MaxLikelihoodCacheSize | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
m_MaxTractLength | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
m_MeasurementFrame | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
m_OutputImageMutex | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
m_OutputTensorImage | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
m_OutputTractContainer | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
m_OutputTractContainerMutex | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
m_RandomGenerator | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
m_SampleDirections | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
m_SeedIndex | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
m_TotalDelegatedTracts | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
m_TotalDelegatedTractsMutex | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
m_TotalTracts | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
m_TransformedGradients | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
MeasurementFrameType typedef | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | |
New() | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | static |
OutputConnectivityImageType typedef | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | |
OutputTensorImageType typedef | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | |
Pointer typedef | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | |
ProbabilisticallyInterpolate(vnl_random &randomgenerator, const TractType::ContinuousIndexType &cindex, typename InputDWIImageType::IndexType &index) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
ProbabilityDistributionImageType typedef | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
SampleTractOrientation(vnl_random &randomgenerator, const ProbabilityDistributionImageType::PixelType &posterior, TractOrientationContainerType::ConstPointer orientations, TractOrientationContainerType::Element &choosendirection) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
Self typedef | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | |
SetbValues(const bValueContainerType *_arg) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | virtual |
SetGradients(const GradientDirectionContainerType *_arg) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | virtual |
SetMaxLikelihoodCacheSize(unsigned int _arg) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | virtual |
SetMaxTractLength(unsigned int _arg) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | virtual |
SetMeasurementFrame(MeasurementFrameType _arg) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | virtual |
SetPrimaryInput(DataObject *input) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | inline |
SetSampleDirections(const TractOrientationContainerType *_arg) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | virtual |
SetSeedIndex(typename InputDWIImageType::IndexType _arg) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | virtual |
SetTotalTracts(unsigned int _arg) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | virtual |
StochasticTractGeneration(typename InputDWIImageType::ConstPointer dwiimagePtr, typename InputWhiteMatterProbabilityImageType::ConstPointer maskimagePtr, typename InputDWIImageType::IndexType seedindex, unsigned long randomseed, TractType::Pointer tract) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
StochasticTractGenerationCallback(void *arg) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protectedstatic |
StochasticTractographyFilter() | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
StoreTract(TractType::Pointer tract) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
Superclass typedef | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | |
TensorModelParamType typedef | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
TractContainerToConnectivityMap(TractContainerType::Pointer tractcontainer) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
TractContainerType typedef | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | |
TractOrientationContainerType typedef | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | |
TractType typedef | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | |
UpdateGradientDirections(void) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
UpdateTensorModelFittingMatrices(void) | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protected |
~StochasticTractographyFilter() | itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > | protectedvirtual |