Medical Imaging Interaction Toolkit  2018.4.99-3e3f1a6e
Medical Imaging Interaction Toolkit
mitk::AbstractGlobalImageFeature Class Referenceabstract

#include <mitkAbstractGlobalImageFeature.h>

Inheritance diagram for mitk::AbstractGlobalImageFeature:
Collaboration diagram for mitk::AbstractGlobalImageFeature:

Public Types

typedef std::vector< std::pair< std::string, double > > FeatureListType
 
typedef std::vector< std::string > FeatureNameListType
 
typedef std::map< std::string, us::AnyParameterTypes
 
- Public Types inherited from mitk::BaseData
typedef BaseData Self
 
typedef itk::DataObject Superclass
 
typedef itk::SmartPointer< SelfPointer
 
typedef itk::SmartPointer< const SelfConstPointer
 
- Public Types inherited from mitk::Identifiable
using UIDType = std::string
 

Public Member Functions

 mitkClassMacro (AbstractGlobalImageFeature, BaseData)
 
virtual FeatureListType CalculateFeatures (const Image::Pointer &feature, const Image::Pointer &mask)=0
 Calculates the feature of this abstact interface. Does not necessarily considers the parameter settings. More...
 
FeatureListType CalculateFeaturesSlicewise (const Image::Pointer &feature, const Image::Pointer &mask, int sliceID)
 Calculates the given feature Slice-wise. Might not be availble for an individual filter! More...
 
virtual void CalculateFeaturesSliceWiseUsingParameters (const Image::Pointer &feature, const Image::Pointer &mask, int sliceID, FeatureListType &featureList)
 Calculates the feature of this abstact interface. Does not necessarily considers the parameter settings. More...
 
virtual void CalculateFeaturesUsingParameters (const Image::Pointer &feature, const Image::Pointer &mask, const Image::Pointer &maskNoNAN, FeatureListType &featureList)=0
 Calculates the feature of this abstact interface. Does not necessarily considers the parameter settings. More...
 
virtual FeatureNameListType GetFeatureNames ()=0
 Returns a list of the names of all features that are calculated from this class. More...
 
virtual std::string GetCurrentFeatureEncoding ()
 Adds an additional Separator to the name of the feature, which encodes the used parameters. More...
 
std::string FeatureDescriptionPrefix ()
 Returns a string that encodes the feature class name. More...
 
virtual void SetPrefix (std::string _arg)
 
virtual void SetShortName (std::string _arg)
 
virtual void SetLongName (std::string _arg)
 
virtual void SetFeatureClassName (std::string _arg)
 
virtual void SetDirection (int _arg)
 
void SetParameter (ParameterTypes param)
 
virtual std::string GetPrefix () const
 
virtual std::string GetShortName () const
 
virtual std::string GetLongName () const
 
virtual std::string GetFeatureClassName () const
 
virtual ParameterTypes GetParameter () const
 
virtual void SetUseQuantifier (bool _arg)
 
virtual bool GetUseQuantifier () const
 
virtual void SetQuantifier (IntensityQuantifier::Pointer _arg)
 
virtual IntensityQuantifier::Pointer GetQuantifier ()
 
virtual int GetDirection () const
 
virtual void SetMinimumIntensity (double _arg)
 
virtual void SetUseMinimumIntensity (bool _arg)
 
virtual void SetMaximumIntensity (double _arg)
 
virtual void SetUseMaximumIntensity (bool _arg)
 
virtual double GetMinimumIntensity () const
 
virtual bool GetUseMinimumIntensity () const
 
virtual double GetMaximumIntensity () const
 
virtual bool GetUseMaximumIntensity () const
 
virtual void SetBinsize (double _arg)
 
virtual void SetUseBinsize (bool _arg)
 
virtual double GetBinsize () const
 
virtual bool GetUseBinsize () const
 
virtual void SetMorphMask (mitk::Image::Pointer _arg)
 
virtual mitk::Image::Pointer GetMorphMask () const
 
virtual void SetBins (int _arg)
 
virtual void SetUseBins (bool _arg)
 
virtual bool GetUseBins () const
 
virtual int GetBins () const
 
virtual void SetIgnoreMask (bool _arg)
 
virtual bool GetIgnoreMask () const
 
virtual void SetEncodeParameters (bool _arg)
 
virtual bool GetEncodeParameters () const
 
std::string GetOptionPrefix () const
 
virtual void AddArguments (mitkCommandLineParser &parser)=0
 
std::vector< double > SplitDouble (std::string str, char delimiter)
 
void AddQuantifierArguments (mitkCommandLineParser &parser)
 
void InitializeQuantifierFromParameters (const Image::Pointer &feature, const Image::Pointer &mask, unsigned int defaultBins=256)
 
void InitializeQuantifier (const Image::Pointer &feature, const Image::Pointer &mask, unsigned int defaultBins=256)
 
std::string QuantifierParameterString ()
 
void SetRequestedRegionToLargestPossibleRegion () override
 Set the RequestedRegion to the LargestPossibleRegion. More...
 
bool RequestedRegionIsOutsideOfTheBufferedRegion () override
 Determine whether the RequestedRegion is outside of the BufferedRegion. More...
 
bool VerifyRequestedRegion () override
 Verify that the RequestedRegion is within the LargestPossibleRegion. More...
 
void SetRequestedRegion (const itk::DataObject *) override
 Set the requested region from this data object to match the requested region of the data object passed in as a parameter. More...
 
bool IsEmpty () const override
 Check whether object contains data (at least at one point in time), e.g., a set of points may be empty. More...
 
- Public Member Functions inherited from mitk::BaseData
virtual std::vector< std::string > GetClassHierarchy () const
 
virtual const char * GetClassName () const
 
BaseProperty::ConstPointer GetConstProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=true) const override
 Get property by its key. More...
 
std::vector< std::string > GetPropertyKeys (const std::string &contextName="", bool includeDefaultContext=false) const override
 Query keys of existing properties. More...
 
std::vector< std::string > GetPropertyContextNames () const override
 Query names of existing contexts. More...
 
BasePropertyGetNonConstProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=true) override
 Get property by its key. More...
 
void SetProperty (const std::string &propertyKey, BaseProperty *property, const std::string &contextName="", bool fallBackOnDefaultContext=false) override
 Add new or change existent property. More...
 
void RemoveProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=false) override
 Removes a property. If the property does not exist, nothing will be done. More...
 
const mitk::TimeGeometryGetTimeGeometry () const
 Return the TimeGeometry of the data as const pointer. More...
 
const mitk::TimeGeometryGetTimeSlicedGeometry () const
 Return the TimeGeometry of the data as const pointer. More...
 
mitk::TimeGeometryGetTimeGeometry ()
 Return the TimeGeometry of the data as pointer. More...
 
const mitk::TimeGeometryGetUpdatedTimeGeometry ()
 Return the TimeGeometry of the data. More...
 
const mitk::TimeGeometryGetUpdatedTimeSliceGeometry ()
 Return the TimeGeometry of the data. More...
 
virtual void Expand (unsigned int timeSteps)
 Expands the TimeGeometry to a number of TimeSteps. More...
 
const mitk::BaseGeometryGetUpdatedGeometry (int t=0)
 Return the BaseGeometry of the data at time t. More...
 
mitk::BaseGeometryGetGeometry (int t=0) const
 Return the geometry, which is a TimeGeometry, of the data as non-const pointer. More...
 
void UpdateOutputInformation () override
 Update the information for this BaseData (the geometry in particular) so that it can be used as an output of a BaseProcess. More...
 
void CopyInformation (const itk::DataObject *data) override
 Copy information from the specified data set. More...
 
virtual bool IsInitialized () const
 Check whether the data has been initialized, i.e., at least the Geometry and other header data has been set. More...
 
virtual void Clear ()
 Calls ClearData() and InitializeEmpty();. More...
 
virtual bool IsEmptyTimeStep (unsigned int t) const
 Check whether object contains data (at a specified time), e.g., a set of points may be empty. More...
 
void ExecuteOperation (Operation *operation) override
 overwrite if the Data can be called by an Interactor (StateMachine). More...
 
virtual void SetGeometry (BaseGeometry *aGeometry3D)
 Set the BaseGeometry of the data, which will be referenced (not copied!). Assumes the data object has only 1 time step ( is a 3D object ) and creates a new TimeGeometry which saves the given BaseGeometry. If an TimeGeometry has already been set for the object, it will be replaced after calling this function. More...
 
virtual void SetTimeGeometry (TimeGeometry *geometry)
 Set the TimeGeometry of the data, which will be referenced (not copied!). More...
 
virtual void SetClonedGeometry (const BaseGeometry *aGeometry3D)
 Set a clone of the provided Geometry as Geometry of the data. Assumes the data object has only 1 time step ( is a 3D object ) and creates a new TimeGeometry. If an TimeGeometry has already been set for the object, it will be replaced after calling this function. More...
 
virtual void SetClonedTimeGeometry (const TimeGeometry *geometry)
 Set a clone of the provided TimeGeometry as TimeGeometry of the data. More...
 
virtual void SetClonedGeometry (const BaseGeometry *aGeometry3D, unsigned int time)
 Set a clone of the provided geometry as BaseGeometry of a given time step. More...
 
mitk::PropertyList::Pointer GetPropertyList () const
 Get the data's property list. More...
 
void SetPropertyList (PropertyList *propertyList)
 Set the data's property list. More...
 
mitk::BaseProperty::Pointer GetProperty (const char *propertyKey) const
 Get the property (instance of BaseProperty) with key propertyKey from the PropertyList, and set it to this, respectively;. More...
 
void SetProperty (const char *propertyKey, BaseProperty *property)
 
virtual void SetOrigin (const Point3D &origin)
 Convenience method for setting the origin of the BaseGeometry instances of all time steps. More...
 
itk::SmartPointer< mitk::BaseDataSourceGetSource () const
 Get the process object that generated this data object. More...
 
unsigned int GetTimeSteps () const
 Get the number of time steps from the TimeGeometry As the base data has not a data vector given by itself, the number of time steps is defined over the time sliced geometry. In sub classes, a better implementation could be over the length of the data vector. More...
 
unsigned long GetMTime () const override
 Get the modified time of the last change of the contents this data object or its geometry. More...
 
void Graft (const DataObject *) override
 
- Public Member Functions inherited from mitk::OperationActor
 itkTypeMacroNoParent (OperationActor) virtual ~OperationActor()
 
- Public Member Functions inherited from mitk::Identifiable
 Identifiable ()
 
 Identifiable (const UIDType &uid)
 
 Identifiable (const Identifiable &)=delete
 
 Identifiable (Identifiable &&) noexcept
 
virtual ~Identifiable ()
 
Identifiableoperator= (const Identifiable &)=delete
 
Identifiableoperator= (Identifiable &&other) noexcept
 
UIDType GetUID () const
 Get unique ID of an object. More...
 
- Public Member Functions inherited from mitk::IPropertyOwner
 ~IPropertyOwner () override
 
- Public Member Functions inherited from mitk::IPropertyProvider
virtual ~IPropertyProvider ()
 

Additional Inherited Members

- Static Public Member Functions inherited from mitk::BaseData
static const char * GetStaticNameOfClass ()
 
- Protected Member Functions inherited from mitk::BaseData
 BaseData ()
 
 BaseData (const BaseData &other)
 
 ~BaseData () override
 
virtual void InitializeTimeGeometry (unsigned int timeSteps=1)
 Initialize the TimeGeometry for a number of time steps. The TimeGeometry is initialized empty and evenly timed. In many cases it will be necessary to overwrite this in sub-classes. More...
 
virtual void InitializeTimeSlicedGeometry (unsigned int timeSteps=1)
 Initialize the TimeGeometry for a number of time steps. The TimeGeometry is initialized empty and evenly timed. In many cases it will be necessary to overwrite this in sub-classes. More...
 
virtual void ClearData ()
 reset to non-initialized state, release memory More...
 
virtual void InitializeEmpty ()
 Pure virtual; Must be used in subclasses to get a data object to a valid state. Should at least create one empty object and call Superclass::InitializeTimeGeometry() to ensure an existing valid geometry. More...
 
void PrintSelf (std::ostream &os, itk::Indent indent) const override
 
- Protected Attributes inherited from mitk::BaseData
bool m_LastRequestedRegionWasOutsideOfTheBufferedRegion
 
unsigned int m_SourceOutputIndexDuplicate
 
bool m_Initialized
 

Detailed Description

Histogram Configuration

Most Feature Generation Classes that use histograms use the same parameters and initialization logic. In general, all information can be passed either by the corresponding Setter (which does not differenciate between global setting and feature specific setting) and a parameter object which can be obtained from the command line arguments, for example.

If the image values are used for the initializiation of the histogram, it can be defined whether the whole image is used or only the masked areas to find minima and maxima. This is done by the option SetIgnoreMask or the corrsponding options -NAME::ignore-mask-for-histogram and -ignore-mask-for-histogram. If these are true, the whole image is used for the calculation.

Depending on the passed arguments, different initialization methods are used. The initialization is in the following order:

  • If Minimum Intensity, Maximum Intensity, and Binsize: The histogram is initialized between the minimum and maximum intensity. the number of bins is determined by the binsize. If the distance between minimum and maximum is not a multiple of the binsize, the maximum is increase so that it is.
  • Minimum Intensity, Bins, and Binsize: The histogram is initialized with the given binsize, and the intensity range from the minimum to \(maximum = minimum + binsize*bins\).
  • Minimum Intensity, Maximum Intensity, and Bins: The histogram is initialized between the given minimum and maximum intensity. The binsize is calculated so that the number of bins is equal to the given number of bins.
  • Binsize, and Minimum Intensity: The maximum is set to the maximum that occur in the given image. Depending if the mask is considered or not, either only masked voxels or the whole image is used for the calculation. The initialization is then equal as if the minimum and maximum would have been given right from the beginning.
  • Binsize, and Maximum Intensity: The minimum intensity is set to the minimum that occur in the given image. Depending if the mask is considered or not, either only masked voxels or the whole image is used for the calculation. The initialization is then equal as if the minimum and maximum would have been given right from the beginning.
  • Binsize: The maximum and the minimum intensity is set to the minimum and maximum that occur in the given image. Depending if the mask is considered or not, either only masked voxels or the whole image is used for the calculation. The initialization is then equal as if the minimum and maximum would have been given right from the beginning.
  • Bins, and Minimum Intensity: The maximum is calculated from the image. Depending if the mask is considered or not, either only masked voxels or the whole image is used for the calculation. The histogram is then initialized as if these values would have been given as minimum and maximum intensity.
  • Bins, and Maximum Intensity: The minimum is calculated from the image. Depending if the mask is considered or not, either only masked voxels or the whole image is used for the calculation. The histogram is then initialized as if these values would have been given as minimum and maximum intensity.
  • Bins: The minimum and the maximum is calculated from the image. Depending if the mask is considered or not, either only masked voxels or * the whole image is used for the calculation. The histogram is then initialized as if these values would have been given as minimum and maximum intensity.
  • No Parameter given:The minimum and maximum intensity from the whole image or masked image is calculated and the histogram then initialized to this with a standard number of bins (Is set by each filter on its own.)

Remark about command line parameter

There are generally two options to set a parameter via the command line. A global one that works for all filters that use histograms and a local one that set this parameter specific for this filter. The local parameters start with the filter name (Indiciated by NAME) followed by two colons, for example vol::min to set the minimum intensity for the volume filter. The global parameter is overwritten by the local parameter, if it is specified. Otherwise, it is still valid. If this prevents the specification of an histogram initialization method (for example, because the binsize is globally specified but the histogram should be initialized using a fixed numbe of bins), the parameter NAME::ignore-global-histogram can be passed. Then, all global histogram parameters are ignored and only local ones are used.

The maximum intensity can be set by different command line parameters: global for all filters that use histograms by -minimum-intensity and -minimum. Alternative it can be set only for this filter by -NAME::minimum and -NAMEmin.

The minimum intensity can be set by different command line parameters: global for all filters that use histograms by -maximum-intensity and -maximum. Alternative it can be set only for this filter by ::maximum and NAME::max.

The binsize can be set by different command line parameters: global for all filters that use histograms by -binsize. Alternative it can be set only for this filter by ::binsize.

The number of bins can be set by different command line parameters: global for all filters that use histograms by -bins. Alternative it can be set only for this filter by ::bins.

Note to the developers

All features are supposed to work the same way if a histogram is used somewhere in the code. For this, each derived class that makes use of a histogram should use the Quantifier object. In order to use this object correctly, the AddArguments-Function should contain the line AddQuantifierArguments(parser);, the CalculateFeaturesUsingParameters function should contain the line InitializeQuantifierFromParameters(feature, mask); and the CalculateFeatures function sould contain the line InitializeQuantifier(image, mask);. These function calls ensure that the necessary options are given to the configuration file, and that the initialization of the quantifier is done correctly. This ensures an consistend behavior over all FeatureGeneration Classes.

Definition at line 124 of file mitkAbstractGlobalImageFeature.h.

Member Typedef Documentation

◆ FeatureListType

typedef std::vector< std::pair<std::string, double> > mitk::AbstractGlobalImageFeature::FeatureListType

Definition at line 129 of file mitkAbstractGlobalImageFeature.h.

◆ FeatureNameListType

typedef std::vector< std::string> mitk::AbstractGlobalImageFeature::FeatureNameListType

Definition at line 130 of file mitkAbstractGlobalImageFeature.h.

◆ ParameterTypes

Definition at line 131 of file mitkAbstractGlobalImageFeature.h.

Member Function Documentation

◆ AddArguments()

◆ AddQuantifierArguments()

◆ CalculateFeatures()

◆ CalculateFeaturesSlicewise()

mitk::AbstractGlobalImageFeature::FeatureListType mitk::AbstractGlobalImageFeature::CalculateFeaturesSlicewise ( const Image::Pointer feature,
const Image::Pointer mask,
int  sliceID 
)

Calculates the given feature Slice-wise. Might not be availble for an individual filter!

Definition at line 341 of file mitkAbstractGlobalImageFeature.cpp.

References CalculateFeatures(), CalculateFeaturesUsingParameters(), and ExtractSlicesFromImages().

Referenced by CalculateFeaturesSliceWiseUsingParameters().

◆ CalculateFeaturesSliceWiseUsingParameters()

void mitk::AbstractGlobalImageFeature::CalculateFeaturesSliceWiseUsingParameters ( const Image::Pointer feature,
const Image::Pointer mask,
int  sliceID,
FeatureListType featureList 
)
virtual

Calculates the feature of this abstact interface. Does not necessarily considers the parameter settings.

Definition at line 334 of file mitkAbstractGlobalImageFeature.cpp.

References CalculateFeaturesSlicewise().

◆ CalculateFeaturesUsingParameters()

◆ FeatureDescriptionPrefix()

std::string mitk::AbstractGlobalImageFeature::FeatureDescriptionPrefix ( )

◆ GetBins()

virtual int mitk::AbstractGlobalImageFeature::GetBins ( ) const
virtual

◆ GetBinsize()

virtual double mitk::AbstractGlobalImageFeature::GetBinsize ( ) const
virtual

◆ GetCurrentFeatureEncoding()

◆ GetDirection()

◆ GetEncodeParameters()

virtual bool mitk::AbstractGlobalImageFeature::GetEncodeParameters ( ) const
virtual

◆ GetFeatureClassName()

virtual std::string mitk::AbstractGlobalImageFeature::GetFeatureClassName ( ) const
virtual

◆ GetFeatureNames()

◆ GetIgnoreMask()

virtual bool mitk::AbstractGlobalImageFeature::GetIgnoreMask ( ) const
virtual

◆ GetLongName()

virtual std::string mitk::AbstractGlobalImageFeature::GetLongName ( ) const
virtual

Referenced by mitk::GIFNeighbourhoodGreyLevelDifference::AddArguments(), mitk::GIFCooccurenceMatrix::AddArguments(), mitk::GIFLocalIntensity::AddArguments(), mitk::GIFImageDescriptionFeatures::AddArguments(), mitk::GIFNeighbourhoodGreyToneDifferenceFeatures::AddArguments(), mitk::GIFCurvatureStatistic::AddArguments(), mitk::GIFFirstOrderHistogramStatistics::AddArguments(), mitk::GIFGreyLevelSizeZone::AddArguments(), mitk::GIFGreyLevelRunLength::AddArguments(), mitk::GIFVolumetricStatistics::AddArguments(), mitk::GIFNeighbouringGreyLevelDependenceFeature::AddArguments(), mitk::GIFFirstOrderStatistics::AddArguments(), mitk::GIFCooccurenceMatrix2::AddArguments(), mitk::GIFGreyLevelDistanceZone::AddArguments(), mitk::GIFNeighbourhoodGreyLevelDifference::CalculateFeaturesUsingParameters(), mitk::GIFCooccurenceMatrix::CalculateFeaturesUsingParameters(), mitk::GIFLocalIntensity::CalculateFeaturesUsingParameters(), mitk::GIFImageDescriptionFeatures::CalculateFeaturesUsingParameters(), mitk::GIFNeighbourhoodGreyToneDifferenceFeatures::CalculateFeaturesUsingParameters(), mitk::GIFCurvatureStatistic::CalculateFeaturesUsingParameters(), mitk::GIFFirstOrderHistogramStatistics::CalculateFeaturesUsingParameters(), mitk::GIFGreyLevelSizeZone::CalculateFeaturesUsingParameters(), mitk::GIFGreyLevelRunLength::CalculateFeaturesUsingParameters(), mitk::GIFVolumetricStatistics::CalculateFeaturesUsingParameters(), mitk::GIFNeighbouringGreyLevelDependenceFeature::CalculateFeaturesUsingParameters(), mitk::GIFFirstOrderStatistics::CalculateFeaturesUsingParameters(), mitk::GIFCooccurenceMatrix2::CalculateFeaturesUsingParameters(), and mitk::GIFGreyLevelDistanceZone::CalculateFeaturesUsingParameters().

◆ GetMaximumIntensity()

virtual double mitk::AbstractGlobalImageFeature::GetMaximumIntensity ( ) const
virtual

◆ GetMinimumIntensity()

virtual double mitk::AbstractGlobalImageFeature::GetMinimumIntensity ( ) const
virtual

◆ GetMorphMask()

virtual mitk::Image::Pointer mitk::AbstractGlobalImageFeature::GetMorphMask ( ) const
virtual

◆ GetOptionPrefix()

std::string mitk::AbstractGlobalImageFeature::GetOptionPrefix ( ) const
inline

Definition at line 222 of file mitkAbstractGlobalImageFeature.h.

References mask.

Referenced by mitk::GIFNeighbourhoodGreyLevelDifference::AddArguments(), mitk::GIFCooccurenceMatrix::AddArguments(), mitk::GIFLocalIntensity::AddArguments(), mitk::GIFImageDescriptionFeatures::AddArguments(), mitk::GIFNeighbourhoodGreyToneDifferenceFeatures::AddArguments(), mitk::GIFCurvatureStatistic::AddArguments(), mitk::GIFFirstOrderHistogramStatistics::AddArguments(), mitk::GIFGreyLevelSizeZone::AddArguments(), mitk::GIFGreyLevelRunLength::AddArguments(), mitk::GIFVolumetricStatistics::AddArguments(), mitk::GIFNeighbouringGreyLevelDependenceFeature::AddArguments(), mitk::GIFFirstOrderStatistics::AddArguments(), mitk::GIFCooccurenceMatrix2::AddArguments(), mitk::GIFGreyLevelDistanceZone::AddArguments(), AddQuantifierArguments(), mitk::GIFNeighbourhoodGreyLevelDifference::CalculateFeaturesUsingParameters(), mitk::GIFCooccurenceMatrix::CalculateFeaturesUsingParameters(), mitk::GIFLocalIntensity::CalculateFeaturesUsingParameters(), mitk::GIFNeighbourhoodGreyToneDifferenceFeatures::CalculateFeaturesUsingParameters(), mitk::GIFFirstOrderHistogramStatistics::CalculateFeaturesUsingParameters(), mitk::GIFGreyLevelSizeZone::CalculateFeaturesUsingParameters(), mitk::GIFGreyLevelRunLength::CalculateFeaturesUsingParameters(), mitk::GIFNeighbouringGreyLevelDependenceFeature::CalculateFeaturesUsingParameters(), mitk::GIFCooccurenceMatrix2::CalculateFeaturesUsingParameters(), mitk::GIFGreyLevelDistanceZone::CalculateFeaturesUsingParameters(), and InitializeQuantifierFromParameters().

◆ GetParameter()

◆ GetPrefix()

virtual std::string mitk::AbstractGlobalImageFeature::GetPrefix ( ) const
virtual

◆ GetQuantifier()

◆ GetShortName()

virtual std::string mitk::AbstractGlobalImageFeature::GetShortName ( ) const
virtual

◆ GetUseBins()

virtual bool mitk::AbstractGlobalImageFeature::GetUseBins ( ) const
virtual

◆ GetUseBinsize()

virtual bool mitk::AbstractGlobalImageFeature::GetUseBinsize ( ) const
virtual

◆ GetUseMaximumIntensity()

virtual bool mitk::AbstractGlobalImageFeature::GetUseMaximumIntensity ( ) const
virtual

◆ GetUseMinimumIntensity()

virtual bool mitk::AbstractGlobalImageFeature::GetUseMinimumIntensity ( ) const
virtual

◆ GetUseQuantifier()

virtual bool mitk::AbstractGlobalImageFeature::GetUseQuantifier ( ) const
virtual

◆ InitializeQuantifier()

◆ InitializeQuantifierFromParameters()

◆ IsEmpty()

bool mitk::AbstractGlobalImageFeature::IsEmpty ( ) const
inlineoverridevirtual

Check whether object contains data (at least at one point in time), e.g., a set of points may be empty.

Warning
Returns IsInitialized()==false by default for compatibility reasons. Override in sub-classes that support distinction between empty/non-empty state.

Reimplemented from mitk::BaseData.

Definition at line 248 of file mitkAbstractGlobalImageFeature.h.

◆ mitkClassMacro()

mitk::AbstractGlobalImageFeature::mitkClassMacro ( AbstractGlobalImageFeature  ,
BaseData   
)

◆ QuantifierParameterString()

◆ RequestedRegionIsOutsideOfTheBufferedRegion()

bool mitk::AbstractGlobalImageFeature::RequestedRegionIsOutsideOfTheBufferedRegion ( )
inlineoverridevirtual

Determine whether the RequestedRegion is outside of the BufferedRegion.

This method returns true if the RequestedRegion is outside the BufferedRegion (true if at least one pixel is outside). This is used by the pipeline mechanism to determine whether a filter needs to re-execute in order to satisfy the current request. If the current RequestedRegion is already inside the BufferedRegion from the previous execution (and the current filter is up to date), then a given filter does not need to re-execute

Implements mitk::BaseData.

Definition at line 243 of file mitkAbstractGlobalImageFeature.h.

◆ SetBins()

virtual void mitk::AbstractGlobalImageFeature::SetBins ( int  _arg)
virtual

◆ SetBinsize()

virtual void mitk::AbstractGlobalImageFeature::SetBinsize ( double  _arg)
virtual

◆ SetDirection()

virtual void mitk::AbstractGlobalImageFeature::SetDirection ( int  _arg)
virtual

◆ SetEncodeParameters()

virtual void mitk::AbstractGlobalImageFeature::SetEncodeParameters ( bool  _arg)
virtual

◆ SetFeatureClassName()

◆ SetIgnoreMask()

virtual void mitk::AbstractGlobalImageFeature::SetIgnoreMask ( bool  _arg)
virtual

◆ SetLongName()

◆ SetMaximumIntensity()

virtual void mitk::AbstractGlobalImageFeature::SetMaximumIntensity ( double  _arg)
virtual

◆ SetMinimumIntensity()

virtual void mitk::AbstractGlobalImageFeature::SetMinimumIntensity ( double  _arg)
virtual

◆ SetMorphMask()

virtual void mitk::AbstractGlobalImageFeature::SetMorphMask ( mitk::Image::Pointer  _arg)
virtual

◆ SetParameter()

void mitk::AbstractGlobalImageFeature::SetParameter ( ParameterTypes  param)
inline

Definition at line 178 of file mitkAbstractGlobalImageFeature.h.

◆ SetPrefix()

virtual void mitk::AbstractGlobalImageFeature::SetPrefix ( std::string  _arg)
virtual

◆ SetQuantifier()

virtual void mitk::AbstractGlobalImageFeature::SetQuantifier ( IntensityQuantifier::Pointer  _arg)
virtual

◆ SetRequestedRegion()

void mitk::AbstractGlobalImageFeature::SetRequestedRegion ( const itk::DataObject *  data)
inlineoverridevirtual

Set the requested region from this data object to match the requested region of the data object passed in as a parameter.

This method is implemented in the concrete subclasses of BaseData.

Implements mitk::BaseData.

Definition at line 245 of file mitkAbstractGlobalImageFeature.h.

◆ SetRequestedRegionToLargestPossibleRegion()

void mitk::AbstractGlobalImageFeature::SetRequestedRegionToLargestPossibleRegion ( )
inlineoverridevirtual

Set the RequestedRegion to the LargestPossibleRegion.

This forces a filter to produce all of the output in one execution (i.e. not streaming) on the next call to Update().

Implements mitk::BaseData.

Definition at line 242 of file mitkAbstractGlobalImageFeature.h.

◆ SetShortName()

◆ SetUseBins()

virtual void mitk::AbstractGlobalImageFeature::SetUseBins ( bool  _arg)
virtual

◆ SetUseBinsize()

virtual void mitk::AbstractGlobalImageFeature::SetUseBinsize ( bool  _arg)
virtual

◆ SetUseMaximumIntensity()

virtual void mitk::AbstractGlobalImageFeature::SetUseMaximumIntensity ( bool  _arg)
virtual

◆ SetUseMinimumIntensity()

virtual void mitk::AbstractGlobalImageFeature::SetUseMinimumIntensity ( bool  _arg)
virtual

◆ SetUseQuantifier()

virtual void mitk::AbstractGlobalImageFeature::SetUseQuantifier ( bool  _arg)
virtual

◆ SplitDouble()

◆ VerifyRequestedRegion()

bool mitk::AbstractGlobalImageFeature::VerifyRequestedRegion ( )
inlineoverridevirtual

Verify that the RequestedRegion is within the LargestPossibleRegion.

If the RequestedRegion is not within the LargestPossibleRegion, then the filter cannot possibly satisfy the request. This method returns true if the request can be satisfied (even if it will be necessary to process the entire LargestPossibleRegion) and returns false otherwise. This method is used by PropagateRequestedRegion(). PropagateRequestedRegion() throws a InvalidRequestedRegionError exception if the requested region is not within the LargestPossibleRegion.

Implements mitk::BaseData.

Definition at line 244 of file mitkAbstractGlobalImageFeature.h.


The documentation for this class was generated from the following files: