itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage > Member List

This is the complete list of members for itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >, including all inherited members.

AccessLikelihoodCache(typename InputDWIImageType::IndexType index)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
bValueContainerType typedef	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >
bValueType typedef	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >
CalculateConstrainedModelParameters(const TensorModelParamType &tensormodelparams, ConstrainedModelParamType &constrainedmodelparams)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
CalculateLikelihood(const DWIVectorImageType::PixelType &dwipixel, TractOrientationContainerType::ConstPointer orientations, ProbabilityDistributionImageType::PixelType &likelihood)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
CalculateNoiseFreeDWIFromConstrainedModel(const ConstrainedModelParamType &constrainedmodelparams, DWIVectorImageType::PixelType &noisefreedwi)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
CalculatePosterior(const ProbabilityDistributionImageType::PixelType &likelihood, const ProbabilityDistributionImageType::PixelType &prior, ProbabilityDistributionImageType::PixelType &posterior)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
CalculatePrior(TractOrientationContainerType::Element v_prev, TractOrientationContainerType::ConstPointer orientations, ProbabilityDistributionImageType::PixelType &prior)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
CalculateResidualVariance(const DWIVectorImageType::PixelType &noisydwi, const DWIVectorImageType::PixelType &noisefreedwi, const vnl_diag_matrix< double > &W, const unsigned int numberofparameters, double &residualvariance)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
CalculateTensorModelParameters(const DWIVectorImageType::PixelType &dwivalues, vnl_diag_matrix< double > &W, TensorModelParamType &tensormodelparams)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
Clone() const	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >
ConstPointer typedef	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >
ConstrainedModelParamType typedef	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
DelegateTract(unsigned long &randomseed)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
DWIVectorImageType typedef	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
FiberExistenceTest(vnl_random &randomgenerator, typename InputWhiteMatterProbabilityImageType::ConstPointer wmpimage, typename InputWhiteMatterProbabilityImageType::IndexType index)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
GenerateData()	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >
GenerateTensorImageOutput(void)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >
GenerateTractContainerOutput(void)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >
GetbValues()	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	virtual
GetClassName() const	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	virtual
GetGradients()	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	virtual
GetMaxLikelihoodCacheSize()	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	virtual
GetMaxTractLength()	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	virtual
GetMeasurementFrame()	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	virtual
GetOutputTensorImage()	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	virtual
GetOutputTractContainer()	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	virtual
GetSampleDirections()	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	virtual
GetSeedIndex()	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	virtual
GetTotalTracts()	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	virtual
GradientDirectionContainerType typedef	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >
InputDWIImageType typedef	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >
InputWhiteMatterProbabilityImageType typedef	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >
itkSetInputMacro(WhiteMatterProbabilityImage, InputWhiteMatterProbabilityImageType) itkGetInputMacro(WhiteMatterProbabilityImage	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >
LikelihoodCacheMutexImageType typedef	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
LoadDefaultSampleDirections(void)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
m_A	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
m_Aqr	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
m_bValues	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
m_ClockPtr	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
m_CurrentLikelihoodCacheElements	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
m_Gradients	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
m_LikelihoodCacheMutex	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
m_LikelihoodCacheMutexImagePtr	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
m_LikelihoodCachePtr	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
m_MaxLikelihoodCacheElements	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
m_MaxLikelihoodCacheSize	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
m_MaxTractLength	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
m_MeasurementFrame	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
m_OutputImageMutex	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
m_OutputTensorImage	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
m_OutputTractContainer	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
m_OutputTractContainerMutex	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
m_RandomGenerator	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
m_SampleDirections	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
m_SeedIndex	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
m_TotalDelegatedTracts	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
m_TotalDelegatedTractsMutex	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
m_TotalTracts	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
m_TransformedGradients	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
MeasurementFrameType typedef	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >
New()	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	static
OutputConnectivityImageType typedef	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >
OutputTensorImageType typedef	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >
Pointer typedef	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >
ProbabilisticallyInterpolate(vnl_random &randomgenerator, const TractType::ContinuousIndexType &cindex, typename InputDWIImageType::IndexType &index)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
ProbabilityDistributionImageType typedef	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
SampleTractOrientation(vnl_random &randomgenerator, const ProbabilityDistributionImageType::PixelType &posterior, TractOrientationContainerType::ConstPointer orientations, TractOrientationContainerType::Element &choosendirection)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
Self typedef	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >
SetbValues(const bValueContainerType *_arg)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	virtual
SetGradients(const GradientDirectionContainerType *_arg)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	virtual
SetMaxLikelihoodCacheSize(unsigned int _arg)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	virtual
SetMaxTractLength(unsigned int _arg)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	virtual
SetMeasurementFrame(MeasurementFrameType _arg)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	virtual
SetPrimaryInput(DataObject *input)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	inline
SetSampleDirections(const TractOrientationContainerType *_arg)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	virtual
SetSeedIndex(typename InputDWIImageType::IndexType _arg)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	virtual
SetTotalTracts(unsigned int _arg)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	virtual
StochasticTractGeneration(typename InputDWIImageType::ConstPointer dwiimagePtr, typename InputWhiteMatterProbabilityImageType::ConstPointer maskimagePtr, typename InputDWIImageType::IndexType seedindex, unsigned long randomseed, TractType::Pointer tract)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
StochasticTractGenerationCallback(void *arg)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protectedstatic
StochasticTractographyFilter()	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
StoreTract(TractType::Pointer tract)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
Superclass typedef	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >
TensorModelParamType typedef	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
TractContainerToConnectivityMap(TractContainerType::Pointer tractcontainer)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
TractContainerType typedef	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >
TractOrientationContainerType typedef	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >
TractType typedef	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >
UpdateGradientDirections(void)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
UpdateTensorModelFittingMatrices(void)	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protected
~StochasticTractographyFilter()	itk::StochasticTractographyFilter< TInputDWIImage, TInputWhiteMatterProbabilityImage, TOutputConnectivityImage >	protectedvirtual