Medical Imaging Interaction Toolkit  2021.02.99-e55a5d2f
Medical Imaging Interaction Toolkit

Simple watershed segmentation tool. More...

#include <mitkWatershedTool.h>

Inheritance diagram for mitk::WatershedTool:
Collaboration diagram for mitk::WatershedTool:

Public Member Functions

 mitkClassMacro (WatershedTool, AutoMLSegmentationWithPreviewTool)
 
Pointer Clone () const
 
const char ** GetXPM () const override
 Returns an icon in the XPM format. More...
 
const char * GetName () const override
 Returns the name of this tool. Make it short! More...
 
us::ModuleResource GetIconResource () const override
 Returns the tool button icon of the tool wrapped by a usModuleResource. More...
 
void Activated () override
 Called when the tool gets activated. More...
 
virtual void SetThreshold (double _arg)
 
virtual double GetThreshold () const
 
virtual void SetLevel (double _arg)
 
virtual double GetLevel () const
 
- Public Member Functions inherited from mitk::AutoMLSegmentationWithPreviewTool
 mitkClassMacro (AutoMLSegmentationWithPreviewTool, AutoSegmentationWithPreviewTool)
 
void Deactivated () override
 Called when the tool gets deactivated. More...
 
void SetSelectedLabels (const SelectedLabelVectorType &regions)
 
SelectedLabelVectorType GetSelectedLabels () const
 
const LabelSetImageGetMLPreview () const
 
- Public Member Functions inherited from mitk::AutoSegmentationWithPreviewTool
 mitkClassMacro (AutoSegmentationWithPreviewTool, AutoSegmentationTool)
 
void Deactivated () override
 Called when the tool gets deactivated. More...
 
void ConfirmSegmentation ()
 
virtual void SetCreateAllTimeSteps (bool _arg)
 
virtual bool GetCreateAllTimeSteps ()
 
virtual void CreateAllTimeStepsOn ()
 
virtual void CreateAllTimeStepsOff ()
 
virtual void SetKeepActiveAfterAccept (bool _arg)
 
virtual bool GetKeepActiveAfterAccept ()
 
virtual void KeepActiveAfterAcceptOn ()
 
virtual void KeepActiveAfterAcceptOff ()
 
virtual void SetIsTimePointChangeAware (bool _arg)
 
virtual bool GetIsTimePointChangeAware ()
 
virtual void IsTimePointChangeAwareOn ()
 
virtual void IsTimePointChangeAwareOff ()
 
virtual void SetResetsToEmptyPreview (bool _arg)
 
virtual bool GetResetsToEmptyPreview ()
 
virtual void ResetsToEmptyPreviewOn ()
 
virtual void ResetsToEmptyPreviewOff ()
 
bool CanHandle (const BaseData *referenceData, const BaseData *workingData) const override
 
void UpdatePreview (bool ignoreLazyPreviewSetting=false)
 
bool IsUpdating () const
 
- Public Member Functions inherited from mitk::AutoSegmentationTool
 mitkClassMacro (AutoSegmentationTool, Tool)
 
void SetOverwriteExistingSegmentation (bool overwrite)
 
std::string GetCurrentSegmentationName ()
 Gets the name of the currently selected segmentation node. More...
 
virtual DataNodeGetTargetSegmentationNode () const
 Depending on the selected mode either returns the currently selected segmentation node or (if overwrite mode is false) creates a new one from the selected reference data. More...
 
- Public Member Functions inherited from mitk::Tool
 mitkClassMacro (Tool, EventStateMachine)
 
virtual std::string GetIconPath () const
 Returns the path of an icon. More...
 
virtual us::ModuleResource GetCursorIconResource () const
 Returns the path of a cursor icon. More...
 
virtual void InitializeStateMachine ()
 
virtual itk::Object::Pointer GetGUI (const std::string &toolkitPrefix, const std::string &toolkitPostfix)
 Interface for GUI creation. More...
 
virtual NodePredicateBase::ConstPointer GetReferenceDataPreference () const
 
virtual NodePredicateBase::ConstPointer GetWorkingDataPreference () const
 
DataNode::Pointer CreateEmptySegmentationNode (const Image *original, const std::string &organName, const mitk::Color &color) const
 
DataNode::Pointer CreateSegmentationNode (Image *image, const std::string &organName, const mitk::Color &color) const
 
- Public Member Functions inherited from mitk::EventStateMachine
virtual std::vector< std::string > GetClassHierarchy () const override
 
virtual const char * GetClassName () const
 
bool LoadStateMachine (const std::string &filename, const us::Module *module=nullptr)
 Loads XML resource. More...
 
bool HandleEvent (InteractionEvent *event, DataNode *dataNode)
 
void EnableUndo (bool enable)
 Enables or disabled Undo. More...
 
void EnableInteraction (bool enable)
 Enables/disables the state machine. In un-enabled state it won't react to any events. More...
 
- Public Member Functions inherited from mitk::InteractionEventHandler
bool SetEventConfig (const std::string &filename, const us::Module *module=nullptr)
 Loads a configuration from an XML resource. More...
 
bool SetEventConfig (const EventConfig &config)
 Loads a configuration from an EventConfig object. More...
 
EventConfig GetEventConfig () const
 Returns the current configuration. More...
 
bool AddEventConfig (const std::string &filename, const us::Module *module=nullptr)
 This method extends the configuration. More...
 
bool AddEventConfig (const EventConfig &config)
 This method extends the configuration. The configuration from the EventConfig object is loaded and only the ones conflicting are replaced by the new one. This way several configurations can be combined. More...
 
- Public Member Functions inherited from mitk::InteractionEventObserver
 InteractionEventObserver ()
 
virtual ~InteractionEventObserver ()
 
void Disable ()
 
void Enable ()
 
bool IsEnabled () const
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from mitk::EventStateMachine
static const char * GetStaticNameOfClass ()
 
- Static Public Member Functions inherited from mitk::InteractionEventHandler
static const char * GetStaticNameOfClass ()
 

Protected Member Functions

 WatershedTool ()=default
 
 ~WatershedTool ()=default
 
LabelSetImage::Pointer ComputeMLPreview (const Image *inputAtTimeStep, TimeStepType timeStep) override
 
- Protected Member Functions inherited from mitk::AutoMLSegmentationWithPreviewTool
 AutoMLSegmentationWithPreviewTool ()
 
 ~AutoMLSegmentationWithPreviewTool ()=default
 
void UpdateCleanUp () override
 
void DoUpdatePreview (const Image *inputAtTimeStep, const Image *oldSegAtTimeStep, Image *previewImage, TimeStepType timeStep) override
 
- Protected Member Functions inherited from mitk::AutoSegmentationWithPreviewTool
virtual void InitiateToolByInput ()
 
virtual void UpdatePrepare ()
 
 AutoSegmentationWithPreviewTool (bool lazyDynamicPreviews=false)
 
 AutoSegmentationWithPreviewTool (bool lazyDynamicPreviews, const char *interactorType, const us::Module *interactorModule=nullptr)
 
 ~AutoSegmentationWithPreviewTool () override
 
ImageGetPreviewSegmentation ()
 
DataNodeGetPreviewSegmentationNode ()
 
const ImageGetSegmentationInput () const
 
const ImageGetReferenceData () const
 
void ResetPreviewNode ()
 
TimePointType GetLastTimePointOfUpdate () const
 
virtual void SetWorkingPlaneGeometry (PlaneGeometry *_arg)
 
virtual const PlaneGeometryGetWorkingPlaneGeometry ()
 
- Protected Member Functions inherited from mitk::AutoSegmentationTool
 AutoSegmentationTool ()
 
 AutoSegmentationTool (const char *interactorType, const us::Module *interactorModule=nullptr)
 
 ~AutoSegmentationTool () override
 
const char * GetGroup () const override
 Name of a group. More...
 
void EnsureTargetSegmentationNodeInDataStorage () const
 
- Protected Member Functions inherited from mitk::Tool
virtual void SetToolManager (ToolManager *)
 
ToolManagerGetToolManager () const
 
mitk::DataStorageGetDataStorage () const
 
void ConnectActionsAndFunctions () override
 
 Tool (const char *, const us::Module *interactorModule=nullptr)
 
 ~Tool () override
 
void Notify (InteractionEvent *interactionEvent, bool isHandled) override
 
bool FilterEvents (InteractionEvent *, DataNode *) override
 
- Protected Member Functions inherited from mitk::EventStateMachine
 EventStateMachine ()
 
 ~EventStateMachine () override
 
void AddActionFunction (const std::string &action, TActionFunctor *functor)
 
void AddActionFunction (const std::string &action, const ActionFunctionDelegate &delegate)
 
void AddConditionFunction (const std::string &condition, const ConditionFunctionDelegate &delegate)
 
StateMachineStateGetCurrentState () const
 
void ResetToStartState ()
 ResetToStartState Reset state machine to it initial starting state. More...
 
virtual bool CheckCondition (const StateMachineCondition &condition, const InteractionEvent *interactionEvent)
 
virtual void ExecuteAction (StateMachineAction *action, InteractionEvent *interactionEvent)
 
void SetMouseCursor (const char *xpm[], int hotspotX, int hotspotY)
 Sets the specified mouse cursor. More...
 
void ResetMouseCursor ()
 Resets the mouse cursor (if modified by the SlicesCoordinator) to its original state. More...
 
StateMachineTransitionGetExecutableTransition (InteractionEvent *event)
 Returns the executable transition for the given event. More...
 
- Protected Member Functions inherited from mitk::InteractionEventHandler
 InteractionEventHandler ()
 
 ~InteractionEventHandler () override
 
PropertyList::Pointer GetAttributes () const
 
std::string MapToEventVariant (InteractionEvent *interactionEvent)
 
virtual void ConfigurationChanged ()
 

Protected Attributes

double m_Threshold
 Threshold parameter of the ITK Watershed Image Filter. See ITK Documentation for more information. More...
 
double m_Level
 Threshold parameter of the ITK Watershed Image Filter. See ITK Documentation for more information. More...
 
- Protected Attributes inherited from mitk::AutoSegmentationWithPreviewTool
mitk::ToolCommand::Pointer m_ProgressCommand
 
- Protected Attributes inherited from mitk::AutoSegmentationTool
bool m_OverwriteExistingSegmentation
 
- Protected Attributes inherited from mitk::Tool
std::string m_EventConfig
 Let subclasses change their event configuration. More...
 
- Protected Attributes inherited from mitk::EventStateMachine
bool m_IsActive
 
UndoControllerm_UndoController
 
bool m_UndoEnabled
 

Additional Inherited Members

- Public Types inherited from mitk::AutoMLSegmentationWithPreviewTool
using SelectedLabelVectorType = std::vector< Label::PixelType >
 
- Public Types inherited from mitk::Tool
typedef mitk::Label::PixelType DefaultSegmentationDataType
 
- Public Types inherited from mitk::EventStateMachine
typedef EventStateMachine Self
 
typedef InteractionEventHandler Superclass
 
typedef itk::SmartPointer< SelfPointer
 
typedef itk::SmartPointer< const SelfConstPointer
 
typedef std::map< std::string, TActionFunctor * > ActionFunctionsMapType
 
typedef itk::SmartPointer< StateMachineStateStateMachineStateType
 
- Public Types inherited from mitk::InteractionEventHandler
typedef InteractionEventHandler Self
 
typedef itk::Object Superclass
 
typedef itk::SmartPointer< SelfPointer
 
typedef itk::SmartPointer< const SelfConstPointer
 
- Public Attributes inherited from mitk::Tool
Message GUIProcessEventsMessage
 To let GUI process new events (e.g. qApp->processEvents() ) More...
 
Message1< std::string > ErrorMessage
 To send error messages (to be shown by some GUI) More...
 
Message1< bool > CurrentlyBusy
 To send whether the tool is busy (to be shown by some GUI) More...
 
Message1< std::string > GeneralMessage
 To send general messages (to be shown by some GUI) More...
 
- Protected Types inherited from mitk::EventStateMachine
typedef MessageAbstractDelegate2< StateMachineAction *, InteractionEvent *, void > ActionFunctionDelegate
 
typedef MessageAbstractDelegate1< const InteractionEvent *, bool > ConditionFunctionDelegate
 
- Static Protected Member Functions inherited from mitk::AutoSegmentationTool
static Image::ConstPointer GetImageByTimeStep (const Image *image, unsigned int timestep)
 
static Image::ConstPointer GetImageByTimePoint (const Image *image, TimePointType timePoint)
 

Detailed Description

Simple watershed segmentation tool.

Wraps ITK Watershed Filter into tool concept of MITK. For more information look into ITK documentation.

Warning
Only to be instantiated by mitk::ToolManager.

Definition at line 37 of file mitkWatershedTool.h.

Constructor & Destructor Documentation

◆ WatershedTool()

mitk::WatershedTool::WatershedTool ( )
protecteddefault

◆ ~WatershedTool()

mitk::WatershedTool::~WatershedTool ( )
protecteddefault

Member Function Documentation

◆ Activated()

void mitk::WatershedTool::Activated ( )
overridevirtual

Called when the tool gets activated.

Derived tools should call their parents implementation at the beginning of the overriding function.

Reimplemented from mitk::AutoMLSegmentationWithPreviewTool.

◆ Clone()

Pointer mitk::WatershedTool::Clone ( ) const

◆ ComputeMLPreview()

LabelSetImage::Pointer mitk::WatershedTool::ComputeMLPreview ( const Image inputAtTimeStep,
TimeStepType  timeStep 
)
overrideprotectedvirtual

Function to generate the new multi lable preview for a given time step input image. The function must be implemented by derived tools. This function is called by DoUpdatePreview if needed. Reasons are:

  • ML preview does not exist
  • Modify time of tools is newer then of ML preview
  • ML preview was not generated for the current selected timestep of input image or for the current selected timepoint.

Implements mitk::AutoMLSegmentationWithPreviewTool.

◆ GetIconResource()

us::ModuleResource mitk::WatershedTool::GetIconResource ( ) const
overridevirtual

Returns the tool button icon of the tool wrapped by a usModuleResource.

Returns
a valid ModuleResource or an invalid if this function is not reimplemented

Reimplemented from mitk::Tool.

◆ GetLevel()

virtual double mitk::WatershedTool::GetLevel ( ) const
virtual

◆ GetName()

const char* mitk::WatershedTool::GetName ( ) const
overridevirtual

Returns the name of this tool. Make it short!

This name has to fit into some kind of button in most applications, so take some time to think of a good name!

Implements mitk::Tool.

◆ GetThreshold()

virtual double mitk::WatershedTool::GetThreshold ( ) const
virtual

◆ GetXPM()

const char** mitk::WatershedTool::GetXPM ( ) const
overridevirtual

Returns an icon in the XPM format.

This icon has to fit into some kind of button in most applications, so make it smaller than 25x25 pixels.

XPM is e.g. supported by The Gimp. But if you open any XPM file in your text editor, you will see that you could also "draw" it with an editor.

Implements mitk::Tool.

◆ mitkClassMacro()

mitk::WatershedTool::mitkClassMacro ( WatershedTool  ,
AutoMLSegmentationWithPreviewTool   
)

◆ New()

static Pointer mitk::WatershedTool::New ( )
static

◆ SetLevel()

virtual void mitk::WatershedTool::SetLevel ( double  _arg)
virtual

◆ SetThreshold()

virtual void mitk::WatershedTool::SetThreshold ( double  _arg)
virtual

Member Data Documentation

◆ m_Level

double mitk::WatershedTool::m_Level
protected

Threshold parameter of the ITK Watershed Image Filter. See ITK Documentation for more information.

Definition at line 65 of file mitkWatershedTool.h.

◆ m_Threshold

double mitk::WatershedTool::m_Threshold
protected

Threshold parameter of the ITK Watershed Image Filter. See ITK Documentation for more information.

Definition at line 63 of file mitkWatershedTool.h.


The documentation for this class was generated from the following file: