Medical Imaging Interaction Toolkit  2022.10.99-184f3f8c
Medical Imaging Interaction Toolkit
mitk::NavigationDataReaderCSV Class Reference

#include <mitkNavigationDataReaderCSV.h>

Inheritance diagram for mitk::NavigationDataReaderCSV:
Collaboration diagram for mitk::NavigationDataReaderCSV:

Public Member Functions

 NavigationDataReaderCSV ()
 ~NavigationDataReaderCSV () override
std::vector< itk::SmartPointer< BaseData > > Read () override
DataStorage::SetOfObjects::Pointer Read (mitk::DataStorage &ds) override
- Public Member Functions inherited from mitk::AbstractFileReader
void SetInput (const std::string &location) override
 Set the input location. More...
void SetInput (const std::string &location, std::istream *is) override
 Set an input stream to read from. More...
std::string GetInputLocation () const override
 Get the current input location. More...
std::istream * GetInputStream () const override
 Get the input stream. More...
MimeType GetRegisteredMimeType () const
std::vector< itk::SmartPointer< BaseData > > Read () override
 Reads a path or stream and creates a list of BaseData objects. More...
DataStorage::SetOfObjects::Pointer Read (mitk::DataStorage &ds) override
 Reads the specified file or input stream, loading its contents into the provided DataStorage. More...
ConfidenceLevel GetConfidenceLevel () const override
 The confidence level of the reader or writer implementation. More...
Options GetOptions () const override
 returns a list of the supported options More...
us::Any GetOption (const std::string &name) const override
void SetOptions (const Options &options) override
void SetOption (const std::string &name, const us::Any &value) override
void AddProgressCallback (const ProgressCallback &callback) override
void RemoveProgressCallback (const ProgressCallback &callback) override
us::ServiceRegistration< IFileReaderRegisterService (us::ModuleContext *context=us::GetModuleContext())
void UnregisterService ()
std::vector< std::string > GetReadFiles () override
void SetProperties (const PropertyList *properties) override
 Optionally provide base data properties as a source of meta data. More...
- Public Member Functions inherited from mitk::IFileReader
 ~IFileReader () override
virtual ~IFileReader ()
- Public Member Functions inherited from mitk::IFileIO
virtual ~IFileIO ()

Protected Member Functions

std::vector< itk::SmartPointer< BaseData > > DoRead () override
mitk::NavigationData::Pointer CreateNd (std::string timestamp, std::string valid, std::string X, std::string Y, std::string Z, std::string QX, std::string QY, std::string QZ, std::string QR)
std::vector< std::string > GetFileContentLineByLine (std::string filename)
int getNumberOfToolsInLine (std::string line)
std::vector< mitk::NavigationData::Pointer > parseLine (std::string line, int NumOfTools)
double StringToDouble (const std::string &s)
std::vector< std::string > splitLine (std::string line)
 NavigationDataReaderCSV (const NavigationDataReaderCSV &other)
mitk::NavigationDataReaderCSVClone () const override
- Protected Member Functions inherited from mitk::AbstractFileReader
 AbstractFileReader ()
 ~AbstractFileReader () override
 AbstractFileReader (const AbstractFileReader &other)
 AbstractFileReader (const CustomMimeType &mimeType, const std::string &description)
virtual us::ServiceProperties GetServiceProperties () const
virtual us::ServiceRegistration< CustomMimeTypeRegisterMimeType (us::ModuleContext *context)
void SetMimeType (const CustomMimeType &mimeType)
const CustomMimeTypeGetMimeType () const
void SetMimeTypePrefix (const std::string &prefix)
std::string GetMimeTypePrefix () const
void SetDescription (const std::string &description)
std::string GetDescription () const
void SetDefaultOptions (const Options &defaultOptions)
Options GetDefaultOptions () const
void SetRanking (int ranking)
 Set the service ranking for this file reader. More...
int GetRanking () const
std::string GetLocalFileName () const
 Get a local file name for reading. More...
virtual void SetDefaultDataNodeProperties (DataNode *node, const std::string &filePath)
const PropertyListGetProperties () const override

Additional Inherited Members

- Public Types inherited from mitk::IFileIO
enum  ConfidenceLevel { Unsupported, PartiallySupported, Supported }
 A confidence level describing the confidence of the reader or writer in handling the given data. More...
typedef std::map< std::string, us::AnyOptions
 Options for reading or writing data. More...
typedef mitk::MessageAbstractDelegate1< float > ProgressCallback
- Static Public Member Functions inherited from mitk::IFileIO
static std::string PROP_DESCRIPTION ()
 Service property name for a description. More...
static std::string PROP_MIMETYPE ()
 Service property name for the mime-type associated with this file writer. More...
- Protected Attributes inherited from mitk::AbstractFileReader
std::vector< std::string > m_ReadFiles

Detailed Description

This class reads csv logged navigation datas from the hard disc and returns the navigation data set.

Caution: at the moment only one navigation data is supported which means that only the data of the first navigation tool in the file is read!

Definition at line 28 of file mitkNavigationDataReaderCSV.h.

Constructor & Destructor Documentation

◆ NavigationDataReaderCSV() [1/2]

mitk::NavigationDataReaderCSV::NavigationDataReaderCSV ( )

◆ ~NavigationDataReaderCSV()

mitk::NavigationDataReaderCSV::~NavigationDataReaderCSV ( )

◆ NavigationDataReaderCSV() [2/2]

mitk::NavigationDataReaderCSV::NavigationDataReaderCSV ( const NavigationDataReaderCSV other)

Member Function Documentation

◆ Clone()

mitk::NavigationDataReaderCSV* mitk::NavigationDataReaderCSV::Clone ( ) const

◆ CreateNd()

mitk::NavigationData::Pointer mitk::NavigationDataReaderCSV::CreateNd ( std::string  timestamp,
std::string  valid,
std::string  X,
std::string  Y,
std::string  Z,
std::string  QX,
std::string  QY,
std::string  QZ,
std::string  QR 

/brief Creates a NavigationData Pointer based on the given Input.

◆ DoRead()

std::vector<itk::SmartPointer<BaseData> > mitk::NavigationDataReaderCSV::DoRead ( )

Method that should be implemented by derived classes and does the real loading. This method is called by Read(). This method must be implemented for each specific reader. Call GetInputStream() first and check for a non-null stream to read from. If the input stream is nullptr, use GetInputLocation() to read from a local file-system path.

If the reader cannot use streams directly, use GetLocalFileName() instead.

The created BaseData objects.
See also

Implements mitk::AbstractFileReader.

◆ GetFileContentLineByLine()

std::vector<std::string> mitk::NavigationDataReaderCSV::GetFileContentLineByLine ( std::string  filename)

/brief Presents File Content line by line

◆ getNumberOfToolsInLine()

int mitk::NavigationDataReaderCSV::getNumberOfToolsInLine ( std::string  line)

/brief Calculates the Number of Tools based on the number of colums per line.

◆ parseLine()

std::vector<mitk::NavigationData::Pointer> mitk::NavigationDataReaderCSV::parseLine ( std::string  line,
int  NumOfTools 

/brief Converts string to double returns zero if failing

◆ Read() [1/2]

std::vector<itk::SmartPointer<BaseData> > mitk::AbstractFileReader::Read
Returns the NavigationDataSet of the first tool in the given file. Returns an empty NavigationDataSet if the file could not be read.

◆ Read() [2/2]

DataStorage::SetOfObjects::Pointer mitk::AbstractFileReader::Read
Returns the NavigationDataSet of the first tool in the given file. Returns an empty NavigationDataSet if the file could not be read.

◆ splitLine()

std::vector<std::string> mitk::NavigationDataReaderCSV::splitLine ( std::string  line)

/brief Split line in elemens based on a given delim

◆ StringToDouble()

double mitk::NavigationDataReaderCSV::StringToDouble ( const std::string &  s)

/brief Converts string to double returns zero if failing

The documentation for this class was generated from the following file: