Medical Imaging Interaction Toolkit
2024.12.99-0da743f6
Medical Imaging Interaction Toolkit
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MiniApps are small command line tools. Generally the purpose of each of these tools is designed to fulfill one simple task, e.g. resample an image or extract image statistics of a given region of interest (ROI).
They are intended to provide command line access to a variety of features of MITK, thus facilitating batched processing of data.
Each MiniApp should provide information about its usage. If it is called without parameters it will output help information about expected inputs, outputs and parameters. Below you can see the help output of the MitkGibbsTracking MiniApp:
The executable file has be to be announced in MITK Workbench. This can be done in Preferences window: Click 'Window' -> 'Preferences', and select 'Command Line Modules'. You can add directories containing executable files or you can select single executable files. Click 'OK' button. The configured command line tools are now available via the drop-down box of the Command Line Modules tab.
MiniApps follow the Slicer Execution Model in describing themselves via xml: