mitkITKImageImport.txx

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/*============================================================================

The Medical Imaging Interaction Toolkit (MITK)

Copyright (c) German Cancer Research Center (DKFZ)
All rights reserved.

Use of this source code is governed by a 3-clause BSD license that can be
found in the LICENSE file.

============================================================================*/

#ifndef __mitkITKImageImport_txx
#define __mitkITKImageImport_txx
#include "mitkITKImageImport.h"
#include "mitkImageReadAccessor.h"

template <class TInputImage>
mitk::ITKImageImport<TInputImage>::ITKImageImport()
{
}

template <class TInputImage>
mitk::ITKImageImport<TInputImage>::~ITKImageImport()
{
}

template <class TInputImage>
typename mitk::ITKImageImport<TInputImage>::InputImageType *mitk::ITKImageImport<TInputImage>::GetInput(void)
{
  return static_cast<TInputImage *>(this->ProcessObject::GetInput(0));
}

template <class TInputImage>
void mitk::ITKImageImport<TInputImage>::SetInput(const InputImageType *input)
{
  this->ProcessObject::SetNthInput(0, const_cast<TInputImage *>(input));
}

template <class TInputImage>
void mitk::ITKImageImport<TInputImage>::SetGeometry(const BaseGeometry *geometry)
{
  if (geometry != nullptr)
  {
    m_Geometry = static_cast<mitk::BaseGeometry *>(geometry->Clone().GetPointer());
  }
  else
  {
    m_Geometry = nullptr;
  }
  Modified();
}

template <class TInputImage>
void mitk::ITKImageImport<TInputImage>::GenerateOutputInformation()
{
  InputImageConstPointer input = this->GetInput();
  mitk::Image::Pointer output = this->GetOutput();

  itkDebugMacro(<< "GenerateOutputInformation()");

  output->InitializeByItk(input.GetPointer());

  if (m_Geometry.IsNotNull())
  {
    output->SetGeometry(m_Geometry);
  }
}

template <class TInputImage>
void mitk::ITKImageImport<TInputImage>::GenerateData()
{
  InputImageConstPointer input = this->GetInput();
  mitk::Image::Pointer output = this->GetOutput();

  output->SetImportChannel((void *)input->GetBufferPointer(), 0, mitk::Image::ReferenceMemory);
}

template <class TInputImage>
void mitk::ITKImageImport<TInputImage>::GenerateInputRequestedRegion()
{
  Superclass::GenerateInputRequestedRegion();

  // Input is an image, cast away the constness so we can set
  // the requested region.
  InputImagePointer input = const_cast<TInputImage *>(this->GetInput());

  // Use the function object RegionCopier to copy the output region
  // to the input.  The default region copier has default implementations
  // to handle the cases where the input and output are the same
  // dimension, the input a higher dimension than the output, and the
  // input a lower dimension than the output.
  InputImageRegionType inputRegion;
  OutputToInputRegionCopierType regionCopier;
  regionCopier(inputRegion, this->GetOutput()->GetRequestedRegion());
  input->SetRequestedRegion(inputRegion);
}

template <class TInputImage>
void mitk::ITKImageImport<TInputImage>::SetNthOutput(DataObjectPointerArraySizeType idx, itk::DataObject *output)
{
  if ((output == nullptr) && (idx == 0))
  {
    // we are disconnected from our output:
    // copy buffer of input to output, because we
    // cannot guarantee that the input (to which our
    // output is refering) will stay alive.
    InputImageConstPointer input = this->GetInput();
    mitk::Image::Pointer currentOutput = this->GetOutput();
    if (input.IsNotNull() && currentOutput.IsNotNull())
      currentOutput->SetChannel(input->GetBufferPointer());
  }
  Superclass::SetNthOutput(idx, output);
}

template <typename ItkOutputImageType>
mitk::Image::Pointer mitk::ImportItkImage(const itk::SmartPointer<ItkOutputImageType> &itkimage,
                                          const BaseGeometry *geometry,
                                          bool update)
{
  typename mitk::ITKImageImport<ItkOutputImageType>::Pointer importer = mitk::ITKImageImport<ItkOutputImageType>::New();
  importer->SetInput(itkimage);
  importer->SetGeometry(geometry);
  if (update)
    importer->Update();
  return importer->GetOutput();
}

template <typename ItkOutputImageType>
mitk::Image::Pointer mitk::ImportItkImage(const ItkOutputImageType *itkimage, const BaseGeometry *geometry, bool update)
{
  typename mitk::ITKImageImport<ItkOutputImageType>::Pointer importer = mitk::ITKImageImport<ItkOutputImageType>::New();
  importer->SetInput(itkimage);
  importer->SetGeometry(geometry);
  if (update)
    importer->Update();
  return importer->GetOutput();
}

template <typename ItkOutputImageType>
mitk::Image::Pointer mitk::GrabItkImageMemory(itk::SmartPointer<ItkOutputImageType> &itkimage,
                                              mitk::Image *mitkImage,
                                              const BaseGeometry *geometry,
                                              bool update)
{
  return GrabItkImageMemory(itkimage.GetPointer(), mitkImage, geometry, update);
}

template <typename ItkOutputImageType>
mitk::Image::Pointer mitk::GrabItkImageMemory(ItkOutputImageType *itkimage,
                                              mitk::Image *mitkImage,
                                              const BaseGeometry *geometry,
                                              bool update)
{
  if (update)
    itkimage->Update();

  mitk::Image::Pointer resultImage;
  if (mitkImage != nullptr)
  {
    resultImage = mitkImage;

    // test the pointer equality with read accessor only if mitk Image is intialized, otherwise an Exception is thrown
    // by the ReadAccessor
    if (mitkImage->IsInitialized())
    {
      // check the data pointer, for that, we need to ignore the lock of the mitkImage
      mitk::ImageReadAccessor read_probe(mitk::Image::Pointer(mitkImage), nullptr, mitk::ImageAccessorBase::IgnoreLock);
      if (itkimage->GetBufferPointer() == read_probe.GetData())
        return resultImage;
    }
  }
  else
  {
    resultImage = mitk::Image::New();
  }
  resultImage->InitializeByItk(itkimage);
  resultImage->SetImportVolume(itkimage->GetBufferPointer(), 0, 0, Image::ManageMemory);
  itkimage->GetPixelContainer()->ContainerManageMemoryOff();

  if (geometry != nullptr)
    resultImage->SetGeometry(static_cast<mitk::BaseGeometry *>(geometry->Clone().GetPointer()));

  return resultImage;
}

#endif //__mitkITKImageImport_txx