mitkGIFIntensityVolumeHistogramTest.cpp

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/*============================================================================

The Medical Imaging Interaction Toolkit (MITK)

Copyright (c) German Cancer Research Center (DKFZ)
All rights reserved.

Use of this source code is governed by a 3-clause BSD license that can be
found in the LICENSE file.

============================================================================*/

#include <mitkTestingMacros.h>
#include <mitkTestFixture.h>
#include "mitkIOUtil.h"
#include <cmath>

#include <mitkGIFIntensityVolumeHistogramFeatures.h>

class mitkGIFIntensityVolumeHistogramTestSuite : public mitk::TestFixture
{
  CPPUNIT_TEST_SUITE( mitkGIFIntensityVolumeHistogramTestSuite);

  MITK_TEST(ImageDescription_PhantomTest_Large);
  MITK_TEST(ImageDescription_PhantomTest_Small);
  MITK_TEST(ImageDescription_PhantomTest_2D);

  CPPUNIT_TEST_SUITE_END();

private:
  mitk::Image::Pointer m_IBSI_Phantom_Image_Small;
  mitk::Image::Pointer m_IBSI_Phantom_Image_Large;
  mitk::Image::Pointer m_IBSI_Phantom_Mask_Small;
  mitk::Image::Pointer m_IBSI_Phantom_Mask_Large;

public:

  void setUp(void) override
  {
    m_IBSI_Phantom_Image_Small = mitk::IOUtil::Load<mitk::Image>(GetTestDataFilePath("Radiomics/IBSI_Phantom_Image_Small.nrrd"));
    m_IBSI_Phantom_Image_Large = mitk::IOUtil::Load<mitk::Image>(GetTestDataFilePath("Radiomics/IBSI_Phantom_Image_Large.nrrd"));
    m_IBSI_Phantom_Mask_Small = mitk::IOUtil::Load<mitk::Image>(GetTestDataFilePath("Radiomics/IBSI_Phantom_Mask_Small.nrrd"));
    m_IBSI_Phantom_Mask_Large = mitk::IOUtil::Load<mitk::Image>(GetTestDataFilePath("Radiomics/IBSI_Phantom_Mask_Large.nrrd"));
  }

  void ImageDescription_PhantomTest_Large()
  {
    mitk::GIFIntensityVolumeHistogramFeatures::Pointer featureCalculator = mitk::GIFIntensityVolumeHistogramFeatures::New();

    featureCalculator->SetUseBinsize(true);
    featureCalculator->SetBinsize(1.0);
    featureCalculator->SetUseMinimumIntensity(true);
    featureCalculator->SetUseMaximumIntensity(true);
    featureCalculator->SetMinimumIntensity(0.5);
    featureCalculator->SetMaximumIntensity(6.5);

    auto featureList = featureCalculator->CalculateFeatures(m_IBSI_Phantom_Image_Large, m_IBSI_Phantom_Mask_Large);

    std::map<std::string, double> results;
    for (auto valuePair : featureList)
    {
      MITK_INFO << valuePair.first << " : " << valuePair.second;
      results[valuePair.first] = valuePair.second;
    }
    CPPUNIT_ASSERT_EQUAL_MESSAGE("Image Diagnostics should calculate 7 features.", std::size_t(7), featureList.size());


    // These values are obtained in cooperation with IBSI
    // Reported with an accuracy of 0.1
    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Intensity Volume Histogram::Volume fraction at 0.10 intensity with Large IBSI Phantom Image", 0.3243, results["Intensity Volume Histogram::Volume fraction at 0.10 intensity"], 0.001);
    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Intensity Volume Histogram::Volume fraction at 0.90 intensity with Large IBSI Phantom Image", 0.09459, results["Intensity Volume Histogram::Volume fraction at 0.90 intensity"], 0.001);
    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Intensity Volume Histogram::Intensity at 0.10 volume with Large IBSI Phantom Image", 5, results["Intensity Volume Histogram::Intensity at 0.10 volume"], 0.001);
    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Intensity Volume Histogram::Intensity at 0.90 volume with Large IBSI Phantom Image", 2, results["Intensity Volume Histogram::Intensity at 0.90 volume"], 0.001);
    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Intensity Volume Histogram::Difference volume fraction at 0.10 and 0.90 intensity  with Large IBSI Phantom Image", 0.22973, results["Intensity Volume Histogram::Difference volume fraction at 0.10 and 0.90 intensity"], 0.001);
    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Intensity Volume Histogram::Difference intensity at 0.10 and 0.90 volume  with Large IBSI Phantom Image", 3, results["Intensity Volume Histogram::Difference intensity at 0.10 and 0.90 volume"], 0.001);
    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Intensity Volume Histogram::Area under IVH curve  with Large IBSI Phantom Image", 0.32027, results["Intensity Volume Histogram::Area under IVH curve"], 0.001);
  }

  void ImageDescription_PhantomTest_Small()
  {
    mitk::GIFIntensityVolumeHistogramFeatures::Pointer featureCalculator = mitk::GIFIntensityVolumeHistogramFeatures::New();

    featureCalculator->SetUseBinsize(true);
    featureCalculator->SetBinsize(1.0);
    featureCalculator->SetUseMinimumIntensity(true);
    featureCalculator->SetUseMaximumIntensity(true);
    featureCalculator->SetMinimumIntensity(0.5);
    featureCalculator->SetMaximumIntensity(6.5);

    auto featureList = featureCalculator->CalculateFeatures(m_IBSI_Phantom_Image_Small, m_IBSI_Phantom_Mask_Small);

    std::map<std::string, double> results;
    for (auto valuePair : featureList)
    {
      MITK_INFO << valuePair.first << " : " << valuePair.second;
      results[valuePair.first] = valuePair.second;
    }
    CPPUNIT_ASSERT_EQUAL_MESSAGE("Image Diagnostics should calculate 7 features.", std::size_t(7), featureList.size());


    // These values are obtained in cooperation with IBSI
    // Reported with an accuracy of 0.1
    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Intensity Volume Histogram::Volume fraction at 0.10 intensity with Large IBSI Phantom Image", 0.3243, results["Intensity Volume Histogram::Volume fraction at 0.10 intensity"], 0.001);
    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Intensity Volume Histogram::Volume fraction at 0.90 intensity with Large IBSI Phantom Image", 0.09459, results["Intensity Volume Histogram::Volume fraction at 0.90 intensity"], 0.001);
    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Intensity Volume Histogram::Intensity at 0.10 volume with Large IBSI Phantom Image", 5, results["Intensity Volume Histogram::Intensity at 0.10 volume"], 0.001);
    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Intensity Volume Histogram::Intensity at 0.90 volume with Large IBSI Phantom Image", 2, results["Intensity Volume Histogram::Intensity at 0.90 volume"], 0.001);
    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Intensity Volume Histogram::Difference volume fraction at 0.10 and 0.90 intensity  with Large IBSI Phantom Image", 0.22973, results["Intensity Volume Histogram::Difference volume fraction at 0.10 and 0.90 intensity"], 0.001);
    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Intensity Volume Histogram::Difference intensity at 0.10 and 0.90 volume  with Large IBSI Phantom Image", 3, results["Intensity Volume Histogram::Difference intensity at 0.10 and 0.90 volume"], 0.001);
    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Intensity Volume Histogram::Area under IVH curve  with Large IBSI Phantom Image", 0.32027, results["Intensity Volume Histogram::Area under IVH curve"], 0.001);
  }

  void ImageDescription_PhantomTest_2D()
  {
    mitk::GIFIntensityVolumeHistogramFeatures::Pointer featureCalculator = mitk::GIFIntensityVolumeHistogramFeatures::New();

    featureCalculator->SetUseBinsize(true);
    featureCalculator->SetBinsize(1.0);
    featureCalculator->SetUseMinimumIntensity(true);
    featureCalculator->SetUseMaximumIntensity(true);
    featureCalculator->SetMinimumIntensity(0.5);
    featureCalculator->SetMaximumIntensity(6.5);

    auto featureList = featureCalculator->CalculateFeaturesSlicewise(m_IBSI_Phantom_Image_Large, m_IBSI_Phantom_Mask_Large, 2);

    std::map<std::string, double> results;
    for (auto valuePair : featureList)
    {
      MITK_INFO << valuePair.first << " : " << valuePair.second;
      results[valuePair.first] = valuePair.second;
    }
    CPPUNIT_ASSERT_EQUAL_MESSAGE("Image Diagnostics should calculate 42 features.", std::size_t(42), featureList.size());


    // These values are obtained by calculating on the features
    // Could be wrong!
    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Intensity Volume Histogram::Volume fraction at 0.10 intensity with Large IBSI Phantom Image", 0.31539, results["SliceWise Mean Intensity Volume Histogram::Volume fraction at 0.10 intensity"], 0.001);
    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Intensity Volume Histogram::Volume fraction at 0.90 intensity with Large IBSI Phantom Image", 0.0924106, results["SliceWise Mean Intensity Volume Histogram::Volume fraction at 0.90 intensity"], 0.001);
    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Intensity Volume Histogram::Intensity at 0.10 volume with Large IBSI Phantom Image", 6, results["SliceWise Mean Intensity Volume Histogram::Intensity at 0.10 volume"], 0.001);
    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Intensity Volume Histogram::Intensity at 0.90 volume with Large IBSI Phantom Image", 2, results["SliceWise Mean Intensity Volume Histogram::Intensity at 0.90 volume"], 0.001);
    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Intensity Volume Histogram::Difference volume fraction at 0.10 and 0.90 intensity  with Large IBSI Phantom Image", 0.222979, results["SliceWise Mean Intensity Volume Histogram::Difference volume fraction at 0.10 and 0.90 intensity"], 0.001);
    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Intensity Volume Histogram::Difference intensity at 0.10 and 0.90 volume  with Large IBSI Phantom Image", 4, results["SliceWise Mean Intensity Volume Histogram::Difference intensity at 0.10 and 0.90 volume"], 0.001);
    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Intensity Volume Histogram::Area under IVH curve  with Large IBSI Phantom Image", 0.314325, results["SliceWise Mean Intensity Volume Histogram::Area under IVH curve"], 0.001);

    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Var. Intensity Volume Histogram::Volume fraction at 0.10 intensity with Large IBSI Phantom Image", 0.0248178, results["SliceWise Var. Intensity Volume Histogram::Volume fraction at 0.10 intensity"], 0.001);
    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Var. Intensity Volume Histogram::Volume fraction at 0.90 intensity with Large IBSI Phantom Image", 0.00149203, results["SliceWise Var. Intensity Volume Histogram::Volume fraction at 0.90 intensity"], 0.001);
    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Var. Intensity Volume Histogram::Intensity at 0.10 volume with Large IBSI Phantom Image", 1, results["SliceWise Var. Intensity Volume Histogram::Intensity at 0.10 volume"], 0.001);
    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Var. Intensity Volume Histogram::Intensity at 0.90 volume with Large IBSI Phantom Image", 0, results["SliceWise Var. Intensity Volume Histogram::Intensity at 0.90 volume"], 0.001);
    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Var. Intensity Volume Histogram::Difference volume fraction at 0.10 and 0.90 intensity  with Large IBSI Phantom Image", 0.01414, results["SliceWise Var. Intensity Volume Histogram::Difference volume fraction at 0.10 and 0.90 intensity"], 0.001);
    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Var. Intensity Volume Histogram::Difference intensity at 0.10 and 0.90 volume  with Large IBSI Phantom Image", 1, results["SliceWise Var. Intensity Volume Histogram::Difference intensity at 0.10 and 0.90 volume"], 0.001);
    CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Var. Intensity Volume Histogram::Area under IVH curve  with Large IBSI Phantom Image", 0.0110923, results["SliceWise Var. Intensity Volume Histogram::Area under IVH curve"], 0.001);
  }

};

MITK_TEST_SUITE_REGISTRATION(mitkGIFIntensityVolumeHistogram)