Medical Imaging Interaction Toolkit  2018.4.99-389bf124
Medical Imaging Interaction Toolkit
mitkGIFCooc2Test.cpp
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1 /*============================================================================
2 
3 The Medical Imaging Interaction Toolkit (MITK)
4 
5 Copyright (c) German Cancer Research Center (DKFZ)
6 All rights reserved.
7 
8 Use of this source code is governed by a 3-clause BSD license that can be
9 found in the LICENSE file.
10 
11 ============================================================================*/
12 
13 #include <mitkTestingMacros.h>
14 #include <mitkTestFixture.h>
15 #include "mitkIOUtil.h"
16 #include <cmath>
17 
18 #include <mitkGIFCooccurenceMatrix2.h>
19 
20 class mitkGIFCooc2TestSuite : public mitk::TestFixture
21 {
22  CPPUNIT_TEST_SUITE(mitkGIFCooc2TestSuite);
23 
24  MITK_TEST(ImageDescription_PhantomTest_3D);
25  MITK_TEST(ImageDescription_PhantomTest_2D);
26 
27  CPPUNIT_TEST_SUITE_END();
28 
29 private:
30  mitk::Image::Pointer m_IBSI_Phantom_Image_Small;
31  mitk::Image::Pointer m_IBSI_Phantom_Image_Large;
32  mitk::Image::Pointer m_IBSI_Phantom_Mask_Small;
33  mitk::Image::Pointer m_IBSI_Phantom_Mask_Large;
34 
35 public:
36 
37  void setUp(void) override
38  {
39  m_IBSI_Phantom_Image_Small = mitk::IOUtil::Load<mitk::Image>(GetTestDataFilePath("Radiomics/IBSI_Phantom_Image_Small.nrrd"));
40  m_IBSI_Phantom_Image_Large = mitk::IOUtil::Load<mitk::Image>(GetTestDataFilePath("Radiomics/IBSI_Phantom_Image_Large.nrrd"));
41  m_IBSI_Phantom_Mask_Small = mitk::IOUtil::Load<mitk::Image>(GetTestDataFilePath("Radiomics/IBSI_Phantom_Mask_Small.nrrd"));
42  m_IBSI_Phantom_Mask_Large = mitk::IOUtil::Load<mitk::Image>(GetTestDataFilePath("Radiomics/IBSI_Phantom_Mask_Large.nrrd"));
43  }
44 
45  void ImageDescription_PhantomTest_3D()
46  {
47  mitk::GIFCooccurenceMatrix2::Pointer featureCalculator = mitk::GIFCooccurenceMatrix2::New();
48 
49  featureCalculator->SetUseBinsize(true);
50  featureCalculator->SetBinsize(1.0);
51  featureCalculator->SetUseMinimumIntensity(true);
52  featureCalculator->SetUseMaximumIntensity(true);
53  featureCalculator->SetMinimumIntensity(0.5);
54  featureCalculator->SetMaximumIntensity(6.5);
55 
56  auto featureList = featureCalculator->CalculateFeatures(m_IBSI_Phantom_Image_Large, m_IBSI_Phantom_Mask_Large);
57 
58  std::map<std::string, double> results;
59  for (auto valuePair : featureList)
60  {
61  MITK_INFO << valuePair.first << " : " << valuePair.second;
62  results[valuePair.first] = valuePair.second;
63  }
64  CPPUNIT_ASSERT_EQUAL_MESSAGE("Image Diagnostics should calculate 18 features.", std::size_t(93), featureList.size());
65 
66  // These values are obtained with IBSI (3D Comb)
67  // Standard accuracy is 0.01
68  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Joint Maximum with Large IBSI Phantom Image", 0.509, results["Co-occurenced Based Features::Overall Joint Maximum"], 0.001);
69  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Joint Average with Large IBSI Phantom Image", 2.149, results["Co-occurenced Based Features::Overall Joint Average"], 0.001);
70  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Joint Variance with Large IBSI Phantom Image", 3.132, results["Co-occurenced Based Features::Overall Joint Variance"], 0.001);
71  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Joint Entropy with Large IBSI Phantom Image", 2.574, results["Co-occurenced Based Features::Overall Joint Entropy"], 0.001);
72  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Difference Average with Large IBSI Phantom Image", 1.379, results["Co-occurenced Based Features::Overall Difference Average"], 0.001);
73  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Difference Variance with Large IBSI Phantom Image", 3.215, results["Co-occurenced Based Features::Overall Difference Variance"], 0.001);
74  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Difference Entropy with Large IBSI Phantom Image", 1.641, results["Co-occurenced Based Features::Overall Difference Entropy"], 0.001);
75  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Sum Average with Large IBSI Phantom Image", 4.298, results["Co-occurenced Based Features::Overall Sum Average"], 0.001);
76  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Sum Variance with Large IBSI Phantom Image", 7.412, results["Co-occurenced Based Features::Overall Sum Variance"], 0.001);
77  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Sum Entropy with Large IBSI Phantom Image", 2.110, results["Co-occurenced Based Features::Overall Sum Entropy"], 0.001);
78  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Angular Second Moment with Large IBSI Phantom Image", 0.291, results["Co-occurenced Based Features::Overall Angular Second Moment"], 0.001);
79  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Contrast with Large IBSI Phantom Image", 5.118, results["Co-occurenced Based Features::Overall Contrast"], 0.001);
80  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Dissimilarity with Large IBSI Phantom Image", 1.380, results["Co-occurenced Based Features::Overall Dissimilarity"], 0.001);
81  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Inverse Difference with Large IBSI Phantom Image", 0.688, results["Co-occurenced Based Features::Overall Inverse Difference"], 0.001);
82  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Inverse Difference Normalized with Large IBSI Phantom Image", 0.856, results["Co-occurenced Based Features::Overall Inverse Difference Normalized"], 0.001);
83  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Inverse Difference Moment with Large IBSI Phantom Image", 0.631, results["Co-occurenced Based Features::Overall Inverse Difference Moment"], 0.001);
84  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Inverse Difference Moment Normalized with Large IBSI Phantom Image", 0.902, results["Co-occurenced Based Features::Overall Inverse Difference Moment Normalized"], 0.001);
85  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Inverse Variance with Large IBSI Phantom Image", 0.057, results["Co-occurenced Based Features::Overall Inverse Variance"], 0.001);
86  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Correlation with Large IBSI Phantom Image", 0.183, results["Co-occurenced Based Features::Overall Correlation"], 0.001);
87  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Autocorrelation with Large IBSI Phantom Image", 5.192, results["Co-occurenced Based Features::Overall Autocorrelation"], 0.001);
88  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Cluster Tendency with Large IBSI Phantom Image", 7.412, results["Co-occurenced Based Features::Overall Cluster Tendency"], 0.001);
89  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Cluster Shade with Large IBSI Phantom Image", 17.419, results["Co-occurenced Based Features::Overall Cluster Shade"], 0.001);
90  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Cluster Prominence with Large IBSI Phantom Image", 147.464, results["Co-occurenced Based Features::Overall Cluster Prominence"], 0.001);
91  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall First Measure of Information Correlation with Large IBSI Phantom Image", -0.0288, results["Co-occurenced Based Features::Overall First Measure of Information Correlation"], 0.001);
92  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Second Measure of Information Correlation with Large IBSI Phantom Image", 0.269, results["Co-occurenced Based Features::Overall Second Measure of Information Correlation"], 0.001);
93 
94  // These values are obtained by manually running the tool
95  // Values might be wrong.
96  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Row Maximum with Large IBSI Phantom Image", 0.679, results["Co-occurenced Based Features::Overall Row Maximum"], 0.001);
97  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Row Average with Large IBSI Phantom Image", 2.149, results["Co-occurenced Based Features::Overall Row Average"], 0.001);
98  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Row Variance with Large IBSI Phantom Image", 3.132, results["Co-occurenced Based Features::Overall Row Variance"], 0.001);
99  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Row Entropy with Large IBSI Phantom Image", 1.306, results["Co-occurenced Based Features::Overall Row Entropy"], 0.001);
100  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall First Row-Column Entropy with Large IBSI Phantom Image", 2.611, results["Co-occurenced Based Features::Overall First Row-Column Entropy"], 0.001);
101  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Overall Second Row-Column Entropy with Large IBSI Phantom Image", 2.611, results["Co-occurenced Based Features::Overall Second Row-Column Entropy"], 0.001);
102 
103 
104 
105 
106  // These values are obtained with IBSI (3D Avg)
107  // Standard accuracy is 0.01
108  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Joint Maximum with Large IBSI Phantom Image", 0.503, results["Co-occurenced Based Features::Mean Joint Maximum"], 0.001);
109  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Joint Average with Large IBSI Phantom Image", 2.143, results["Co-occurenced Based Features::Mean Joint Average"], 0.001);
110  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Joint Variance with Large IBSI Phantom Image", 3.099, results["Co-occurenced Based Features::Mean Joint Variance"], 0.001);
111  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Joint Entropy with Large IBSI Phantom Image", 2.399, results["Co-occurenced Based Features::Mean Joint Entropy"], 0.001);
112  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Difference Average with Large IBSI Phantom Image", 1.431, results["Co-occurenced Based Features::Mean Difference Average"], 0.001);
113  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Difference Variance with Large IBSI Phantom Image", 3.056, results["Co-occurenced Based Features::Mean Difference Variance"], 0.001);
114  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Difference Entropy with Large IBSI Phantom Image", 1.563, results["Co-occurenced Based Features::Mean Difference Entropy"], 0.001);
115  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Sum Average with Large IBSI Phantom Image", 4.2859, results["Co-occurenced Based Features::Mean Sum Average"], 0.001);
116  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Sum Variance with Large IBSI Phantom Image", 7.072, results["Co-occurenced Based Features::Mean Sum Variance"], 0.001);
117  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Sum Entropy with Large IBSI Phantom Image", 1.9226, results["Co-occurenced Based Features::Mean Sum Entropy"], 0.001);
118  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Angular Second Moment with Large IBSI Phantom Image", 0.303, results["Co-occurenced Based Features::Mean Angular Second Moment"], 0.001);
119  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Contrast with Large IBSI Phantom Image", 5.3245, results["Co-occurenced Based Features::Mean Contrast"], 0.001);
120  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Dissimilarity with Large IBSI Phantom Image", 1.431, results["Co-occurenced Based Features::Mean Dissimilarity"], 0.001);
121  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Inverse Difference with Large IBSI Phantom Image", 0.6766, results["Co-occurenced Based Features::Mean Inverse Difference"], 0.001);
122  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Inverse Difference Normalized with Large IBSI Phantom Image", 0.8506, results["Co-occurenced Based Features::Mean Inverse Difference Normalized"], 0.001);
123  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Inverse Difference Moment with Large IBSI Phantom Image", 0.6177, results["Co-occurenced Based Features::Mean Inverse Difference Moment"], 0.001);
124  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Inverse Difference Moment Normalized with Large IBSI Phantom Image", 0.8984, results["Co-occurenced Based Features::Mean Inverse Difference Moment Normalized"], 0.001);
125  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Inverse Variance with Large IBSI Phantom Image", 0.0604, results["Co-occurenced Based Features::Mean Inverse Variance"], 0.001);
126  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Correlation with Large IBSI Phantom Image", 0.157, results["Co-occurenced Based Features::Mean Correlation"], 0.001);
127  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Autocorrelation with Large IBSI Phantom Image", 5.05544, results["Co-occurenced Based Features::Mean Autocorrelation"], 0.001);
128  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Cluster Tendency with Large IBSI Phantom Image", 7.0728, results["Co-occurenced Based Features::Mean Cluster Tendency"], 0.001);
129  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Cluster Shade with Large IBSI Phantom Image", 16.6441, results["Co-occurenced Based Features::Mean Cluster Shade"], 0.001);
130  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Cluster Prominence with Large IBSI Phantom Image", 144.703, results["Co-occurenced Based Features::Mean Cluster Prominence"], 0.001);
131  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean First Measure of Information Correlation with Large IBSI Phantom Image", -0.15684, results["Co-occurenced Based Features::Mean First Measure of Information Correlation"], 0.001);
132  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Second Measure of Information Correlation with Large IBSI Phantom Image", 0.519588, results["Co-occurenced Based Features::Mean Second Measure of Information Correlation"], 0.001);
133 
134  // These values are obtained by manually running the tool
135  // Values might be wrong.
136  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Row Maximum with Large IBSI Phantom Image", 0.6808, results["Co-occurenced Based Features::Mean Row Maximum"], 0.001);
137  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Row Average with Large IBSI Phantom Image", 2.143, results["Co-occurenced Based Features::Mean Row Average"], 0.001);
138  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Row Variance with Large IBSI Phantom Image", 3.0993, results["Co-occurenced Based Features::Mean Row Variance"], 0.001);
139  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Row Entropy with Large IBSI Phantom Image", 1.29699, results["Co-occurenced Based Features::Mean Row Entropy"], 0.001);
140  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean First Row-Column Entropy with Large IBSI Phantom Image", 2.5939, results["Co-occurenced Based Features::Mean First Row-Column Entropy"], 0.001);
141  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("Co-occurenced Based Features::Mean Second Row-Column Entropy with Large IBSI Phantom Image", 2.5939, results["Co-occurenced Based Features::Mean Second Row-Column Entropy"], 0.001);
142  }
143 
144  void ImageDescription_PhantomTest_2D()
145  {
146  mitk::GIFCooccurenceMatrix2::Pointer featureCalculator = mitk::GIFCooccurenceMatrix2::New();
147 
148  featureCalculator->SetUseBinsize(true);
149  featureCalculator->SetBinsize(1.0);
150  featureCalculator->SetUseMinimumIntensity(true);
151  featureCalculator->SetUseMaximumIntensity(true);
152  featureCalculator->SetMinimumIntensity(0.5);
153  featureCalculator->SetMaximumIntensity(6.5);
154 
155  auto featureList = featureCalculator->CalculateFeaturesSlicewise(m_IBSI_Phantom_Image_Large, m_IBSI_Phantom_Mask_Large, 2);
156 
157  std::map<std::string, double> results;
158  for (auto valuePair : featureList)
159  {
160  MITK_INFO << valuePair.first << " : " << valuePair.second;
161  results[valuePair.first] = valuePair.second;
162  }
163  CPPUNIT_ASSERT_EQUAL_MESSAGE("Image Diagnostics should calculate 558 features.", std::size_t(558), featureList.size());
164 
165  // These values are obtained with IBSI
166  // Standard accuracy is 0.01
167  // These values are obtained with IBSI (2D Comb)
168  // Standard accuracy is 0.01
169  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Joint Maximum with Large IBSI Phantom Image", 0.512, results["SliceWise Mean Co-occurenced Based Features::Overall Joint Maximum"], 0.001);
170  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Joint Average with Large IBSI Phantom Image", 2.143, results["SliceWise Mean Co-occurenced Based Features::Overall Joint Average"], 0.001);
171  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Joint Variance with Large IBSI Phantom Image", 2.7115, results["SliceWise Mean Co-occurenced Based Features::Overall Joint Variance"], 0.001);
172  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Joint Entropy with Large IBSI Phantom Image", 2.2383, results["SliceWise Mean Co-occurenced Based Features::Overall Joint Entropy"], 0.001);
173  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Difference Average with Large IBSI Phantom Image", 1.3990, results["SliceWise Mean Co-occurenced Based Features::Overall Difference Average"], 0.001);
174  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Difference Variance with Large IBSI Phantom Image", 3.06426, results["SliceWise Mean Co-occurenced Based Features::Overall Difference Variance"], 0.001);
175  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Difference Entropy with Large IBSI Phantom Image", 1.49262, results["SliceWise Mean Co-occurenced Based Features::Overall Difference Entropy"], 0.001);
176  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Sum Average with Large IBSI Phantom Image", 4.28686, results["SliceWise Mean Co-occurenced Based Features::Overall Sum Average"], 0.001);
177  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Sum Variance with Large IBSI Phantom Image", 5.65615, results["SliceWise Mean Co-occurenced Based Features::Overall Sum Variance"], 0.001);
178  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Sum Entropy with Large IBSI Phantom Image", 1.79494, results["SliceWise Mean Co-occurenced Based Features::Overall Sum Entropy"], 0.001);
179  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Angular Second Moment with Large IBSI Phantom Image", 0.351678, results["SliceWise Mean Co-occurenced Based Features::Overall Angular Second Moment"], 0.001);
180  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Contrast with Large IBSI Phantom Image", 5.19019, results["SliceWise Mean Co-occurenced Based Features::Overall Contrast"], 0.001);
181  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Dissimilarity with Large IBSI Phantom Image", 1.3990, results["SliceWise Mean Co-occurenced Based Features::Overall Dissimilarity"], 0.001);
182  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Inverse Difference with Large IBSI Phantom Image", 0.683294, results["SliceWise Mean Co-occurenced Based Features::Overall Inverse Difference"], 0.001);
183  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Inverse Difference Normalized with Large IBSI Phantom Image", 0.8538, results["SliceWise Mean Co-occurenced Based Features::Overall Inverse Difference Normalized"], 0.001);
184  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Inverse Difference Moment with Large IBSI Phantom Image", 0.625003, results["SliceWise Mean Co-occurenced Based Features::Overall Inverse Difference Moment"], 0.001);
185  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Inverse Difference Moment Normalized with Large IBSI Phantom Image", 0.90088, results["SliceWise Mean Co-occurenced Based Features::Overall Inverse Difference Moment Normalized"], 0.001);
186  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Inverse Variance with Large IBSI Phantom Image", 0.055286, results["SliceWise Mean Co-occurenced Based Features::Overall Inverse Variance"], 0.001);
187  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Correlation with Large IBSI Phantom Image", 0.0173072, results["SliceWise Mean Co-occurenced Based Features::Overall Correlation"], 0.001);
188  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Autocorrelation with Large IBSI Phantom Image", 5.13953, results["SliceWise Mean Co-occurenced Based Features::Overall Autocorrelation"], 0.001);
189  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Cluster Tendency with Large IBSI Phantom Image", 5.6561, results["SliceWise Mean Co-occurenced Based Features::Overall Cluster Tendency"], 0.001);
190  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Cluster Shade with Large IBSI Phantom Image", 6.97661, results["SliceWise Mean Co-occurenced Based Features::Overall Cluster Shade"], 0.001);
191  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Cluster Prominence with Large IBSI Phantom Image", 80.3855, results["SliceWise Mean Co-occurenced Based Features::Overall Cluster Prominence"], 0.001);
192  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall First Measure of Information Correlation with Large IBSI Phantom Image", -0.0340891, results["SliceWise Mean Co-occurenced Based Features::Overall First Measure of Information Correlation"], 0.001);
193  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Second Measure of Information Correlation with Large IBSI Phantom Image", 0.2625, results["SliceWise Mean Co-occurenced Based Features::Overall Second Measure of Information Correlation"], 0.001);
194 
195  // These values are obtained by manually running the tool
196  // Values might be wrong.
197  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Row Maximum with Large IBSI Phantom Image", 0.682689, results["SliceWise Mean Co-occurenced Based Features::Overall Row Maximum"], 0.001);
198  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Row Average with Large IBSI Phantom Image", 2.14343, results["SliceWise Mean Co-occurenced Based Features::Overall Row Average"], 0.001);
199  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Row Variance with Large IBSI Phantom Image", 2.71158, results["SliceWise Mean Co-occurenced Based Features::Overall Row Variance"], 0.001);
200  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Row Entropy with Large IBSI Phantom Image", 1.13773, results["SliceWise Mean Co-occurenced Based Features::Overall Row Entropy"], 0.001);
201  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall First Row-Column Entropy with Large IBSI Phantom Image", 2.27545, results["SliceWise Mean Co-occurenced Based Features::Overall First Row-Column Entropy"], 0.001);
202  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Overall Second Row-Column Entropy with Large IBSI Phantom Image", 2.27545, results["SliceWise Mean Co-occurenced Based Features::Overall Second Row-Column Entropy"], 0.001);
203 
204 
205 
206 
207  // These values are obtained with IBSI (2D Avg)
208  // Standard accuracy is 0.01
209  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Joint Maximum with Large IBSI Phantom Image", 0.5188, results["SliceWise Mean Co-occurenced Based Features::Mean Joint Maximum"], 0.001);
210  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Joint Average with Large IBSI Phantom Image", 2.14242, results["SliceWise Mean Co-occurenced Based Features::Mean Joint Average"], 0.001);
211  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Joint Variance with Large IBSI Phantom Image", 2.6877, results["SliceWise Mean Co-occurenced Based Features::Mean Joint Variance"], 0.001);
212  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Joint Entropy with Large IBSI Phantom Image", 2.04966, results["SliceWise Mean Co-occurenced Based Features::Mean Joint Entropy"], 0.001);
213  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Difference Average with Large IBSI Phantom Image", 1.42247, results["SliceWise Mean Co-occurenced Based Features::Mean Difference Average"], 0.001);
214  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Difference Variance with Large IBSI Phantom Image", 2.90159, results["SliceWise Mean Co-occurenced Based Features::Mean Difference Variance"], 0.001);
215  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Difference Entropy with Large IBSI Phantom Image", 1.39615, results["SliceWise Mean Co-occurenced Based Features::Mean Difference Entropy"], 0.001);
216  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Sum Average with Large IBSI Phantom Image", 4.28484, results["SliceWise Mean Co-occurenced Based Features::Mean Sum Average"], 0.001);
217  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Sum Variance with Large IBSI Phantom Image", 5.47293, results["SliceWise Mean Co-occurenced Based Features::Mean Sum Variance"], 0.001);
218  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Sum Entropy with Large IBSI Phantom Image", 1.60319, results["SliceWise Mean Co-occurenced Based Features::Mean Sum Entropy"], 0.001);
219  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Angular Second Moment with Large IBSI Phantom Image", 0.367529, results["SliceWise Mean Co-occurenced Based Features::Mean Angular Second Moment"], 0.001);
220  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Contrast with Large IBSI Phantom Image", 5.27785, results["SliceWise Mean Co-occurenced Based Features::Mean Contrast"], 0.001);
221  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Dissimilarity with Large IBSI Phantom Image", 1.42247, results["SliceWise Mean Co-occurenced Based Features::Mean Dissimilarity"], 0.001);
222  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Inverse Difference with Large IBSI Phantom Image", 0.677949, results["SliceWise Mean Co-occurenced Based Features::Mean Inverse Difference"], 0.001);
223  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Inverse Difference Normalized with Large IBSI Phantom Image", 0.851399, results["SliceWise Mean Co-occurenced Based Features::Mean Inverse Difference Normalized"], 0.001);
224  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Inverse Difference Moment with Large IBSI Phantom Image", 0.618737, results["SliceWise Mean Co-occurenced Based Features::Mean Inverse Difference Moment"], 0.001);
225  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Inverse Difference Moment Normalized with Large IBSI Phantom Image", 0.899219, results["SliceWise Mean Co-occurenced Based Features::Mean Inverse Difference Moment Normalized"], 0.001);
226  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Inverse Variance with Large IBSI Phantom Image", 0.0566983, results["SliceWise Mean Co-occurenced Based Features::Mean Inverse Variance"], 0.001);
227  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Correlation with Large IBSI Phantom Image", -.012107, results["SliceWise Mean Co-occurenced Based Features::Mean Correlation"], 0.001);
228  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Autocorrelation with Large IBSI Phantom Image", 5.09437, results["SliceWise Mean Co-occurenced Based Features::Mean Autocorrelation"], 0.001);
229  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Cluster Tendency with Large IBSI Phantom Image", 5.47293, results["SliceWise Mean Co-occurenced Based Features::Mean Cluster Tendency"], 0.001);
230  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Cluster Shade with Large IBSI Phantom Image", 6.99782, results["SliceWise Mean Co-occurenced Based Features::Mean Cluster Shade"], 0.001);
231  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Cluster Prominence with Large IBSI Phantom Image", 79.1126, results["SliceWise Mean Co-occurenced Based Features::Mean Cluster Prominence"], 0.001);
232  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean First Measure of Information Correlation with Large IBSI Phantom Image", -0.15512, results["SliceWise Mean Co-occurenced Based Features::Mean First Measure of Information Correlation"], 0.001);
233  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Second Measure of Information Correlation with Large IBSI Phantom Image", 0.487457, results["SliceWise Mean Co-occurenced Based Features::Mean Second Measure of Information Correlation"], 0.001);
234 
235  // These values are obtained by manually running the tool
236  // Values might be wrong.
237  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Row Maximum with Large IBSI Phantom Image", 0.689717, results["SliceWise Mean Co-occurenced Based Features::Mean Row Maximum"], 0.001);
238  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Row Average with Large IBSI Phantom Image", 2.14242, results["SliceWise Mean Co-occurenced Based Features::Mean Row Average"], 0.001);
239  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Row Variance with Large IBSI Phantom Image", 2.6877, results["SliceWise Mean Co-occurenced Based Features::Mean Row Variance"], 0.001);
240  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Row Entropy with Large IBSI Phantom Image", 1.1238, results["SliceWise Mean Co-occurenced Based Features::Mean Row Entropy"], 0.001);
241  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean First Row-Column Entropy with Large IBSI Phantom Image", 2.24761, results["SliceWise Mean Co-occurenced Based Features::Mean First Row-Column Entropy"], 0.001);
242  CPPUNIT_ASSERT_DOUBLES_EQUAL_MESSAGE("SliceWise Mean Co-occurenced Based Features::Mean Second Row-Column Entropy with Large IBSI Phantom Image", 2.24761, results["SliceWise Mean Co-occurenced Based Features::Mean Second Row-Column Entropy"], 0.001);
243  }
244 
245 };
246 
247 MITK_TEST_SUITE_REGISTRATION(mitkGIFCooc2 )
MITK_TEST_SUITE_REGISTRATION
MITK_TEST_SUITE_REGISTRATION(mitkImageToItk)
MITK_INFO
#define MITK_INFO
Definition: mitkLogMacros.h:18
MITK_TEST
#define MITK_TEST(TESTMETHOD)
Adds a test to the current test suite.
Definition: mitkTestingMacros.h:295
mitk::TestFixture::GetTestDataFilePath
static std::string GetTestDataFilePath(const std::string &testData)
Get the absolute path for test data.
Definition: mitkTestFixture.h:107
mitk::TestFixture
Test fixture for parameterized tests.
Definition: mitkTestFixture.h:86