Medical Imaging Interaction Toolkit  2018.4.99-a3d2e8fb
Medical Imaging Interaction Toolkit
mitk::pa::SpectralUnmixingSO2 Class Reference

derives out of two identical sized MITK images the oxygen saturation and return one MITK image as result. Furthermore it is possible to set settings that the result shows just SO2 values above a threshold, or above a input value for Hb, HbO2 to get just a oxygen saturation image of interessting structures. More...

#include <mitkPASpectralUnmixingSO2.h>

Inheritance diagram for mitk::pa::SpectralUnmixingSO2:
Collaboration diagram for mitk::pa::SpectralUnmixingSO2:

Public Member Functions

 mitkClassMacro (SpectralUnmixingSO2, mitk::ImageToImageFilter)
 
virtual void AddSO2Settings (int value)
 AddSO2Settings takes integers and writes them at the end of the m_SO2Settings vector. More...
 
virtual void Verbose (bool verbose)
 Verbose gives more information to the console. Default value is false. More...
 
- Public Member Functions inherited from mitk::ImageToImageFilter
virtual std::vector< std::string > GetClassHierarchy () const override
 
virtual const char * GetClassName () const
 
Pointer Clone () const
 
virtual void SetInput (const InputImageType *image)
 
virtual void SetInput (unsigned int, const InputImageType *image)
 
InputImageTypeGetInput (void)
 
InputImageTypeGetInput (unsigned int idx)
 
const InputImageTypeGetInput (void) const
 
const InputImageTypeGetInput (unsigned int idx) const
 
- Public Member Functions inherited from mitk::ImageSource
Pointer Clone () const
 
OutputTypeGetOutput ()
 Get the output data of this image source object. More...
 
const OutputTypeGetOutput () const
 
OutputTypeGetOutput (DataObjectPointerArraySizeType idx)
 
const OutputTypeGetOutput (DataObjectPointerArraySizeType idx) const
 
itk::DataObject::Pointer MakeOutput (DataObjectPointerArraySizeType idx) override
 Make a DataObject of the correct type to used as the specified output. More...
 
itk::DataObject::Pointer MakeOutput (const DataObjectIdentifierType &name) override
 
virtual vtkImageData * GetVtkImageData ()
 
virtual const vtkImageData * GetVtkImageData () const
 
- Public Member Functions inherited from mitk::BaseDataSource
OutputTypeGetOutput ()
 
const OutputTypeGetOutput () const
 
OutputTypeGetOutput (DataObjectPointerArraySizeType idx)
 
const OutputTypeGetOutput (DataObjectPointerArraySizeType idx) const
 
virtual void GraftOutput (OutputType *output)
 Graft the specified BaseData onto this BaseDataSource's output. More...
 
virtual void GraftOutput (const DataObjectIdentifierType &key, OutputType *output)
 
virtual void GraftNthOutput (unsigned int idx, OutputType *output)
 Graft the specified base data object onto this BaseDataSource's idx'th output. More...
 
bool Updating () const
 Access itk::ProcessObject::m_Updating. More...
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from mitk::ImageToImageFilter
static const char * GetStaticNameOfClass ()
 
static Pointer New ()
 
- Static Public Member Functions inherited from mitk::ImageSource
static const char * GetStaticNameOfClass ()
 
static Pointer New ()
 Method for creation through the object factory. More...
 
- Static Public Member Functions inherited from mitk::BaseDataSource
static const char * GetStaticNameOfClass ()
 

Protected Member Functions

 SpectralUnmixingSO2 ()
 Constructor sets number of input images to two and number of output images to one, respectively. More...
 
 ~SpectralUnmixingSO2 () override
 
- Protected Member Functions inherited from mitk::ImageToImageFilter
 ImageToImageFilter ()
 
 ~ImageToImageFilter () override
 
void PrintSelf (std::ostream &os, itk::Indent indent) const override
 
void GenerateInputRequestedRegion () override
 
- Protected Member Functions inherited from mitk::ImageSource
 ImageSource ()
 
 ~ImageSource () override
 
void GenerateData () override
 A version of GenerateData() specific for image processing filters. More...
 
virtual void ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, itk::ThreadIdType threadId)
 If an imaging filter can be implemented as a multithreaded algorithm, the filter will provide an implementation of ThreadedGenerateData(). More...
 
void PrepareOutputs () override
 This method is intentionally left blank. More...
 
virtual void AllocateOutputs ()
 The GenerateData method normally allocates the buffers for all of the outputs of a filter. More...
 
virtual void BeforeThreadedGenerateData ()
 If an imaging filter needs to perform processing after the buffer has been allocated but before threads are spawned, the filter can can provide an implementation for BeforeThreadedGenerateData(). More...
 
virtual void AfterThreadedGenerateData ()
 If an imaging filter needs to perform processing after all processing threads have completed, the filter can can provide an implementation for AfterThreadedGenerateData(). More...
 
virtual unsigned int SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion)
 Split the output's RequestedRegion into "num" pieces, returning region "i" as "splitRegion". More...
 
- Protected Member Functions inherited from mitk::BaseDataSource
 BaseDataSource ()
 
 ~BaseDataSource () override
 

Protected Attributes

std::vector< int > m_SO2Settings
 
bool m_Verbose
 

Additional Inherited Members

- Public Types inherited from mitk::ImageToImageFilter
typedef ImageToImageFilter Self
 
typedef ImageSource Superclass
 
typedef itk::SmartPointer< SelfPointer
 
typedef itk::SmartPointer< const SelfConstPointer
 
typedef Superclass::OutputImageRegionType OutputImageRegionType
 
typedef mitk::Image InputImageType
 
typedef InputImageType::Pointer InputImagePointer
 
typedef InputImageType::ConstPointer InputImageConstPointer
 
typedef SlicedData::RegionType InputImageRegionType
 
- Public Types inherited from mitk::ImageSource
typedef ImageSource Self
 
typedef BaseDataSource Superclass
 
typedef itk::SmartPointer< SelfPointer
 
typedef itk::SmartPointer< const SelfConstPointer
 
typedef mitk::Image OutputImageType
 Some convenient typedefs. More...
 
typedef OutputImageType OutputType
 
typedef OutputImageType::Pointer OutputImagePointer
 
typedef SlicedData::RegionType OutputImageRegionType
 
- Public Types inherited from mitk::BaseDataSource
typedef BaseDataSource Self
 
typedef itk::ProcessObject Superclass
 
typedef itk::SmartPointer< SelfPointer
 
typedef itk::SmartPointer< const SelfConstPointer
 
typedef BaseData OutputType
 
typedef itk::DataObject::DataObjectIdentifierType DataObjectIdentifierType
 
- Static Protected Member Functions inherited from mitk::ImageSource
static ITK_THREAD_RETURN_TYPE ThreaderCallback (void *arg)
 Static function used as a "callback" by the MultiThreader. More...
 
- Static Protected Member Functions inherited from mitk::BaseDataSource
static Pointer New ()
 

Detailed Description

derives out of two identical sized MITK images the oxygen saturation and return one MITK image as result. Furthermore it is possible to set settings that the result shows just SO2 values above a threshold, or above a input value for Hb, HbO2 to get just a oxygen saturation image of interessting structures.

Input: The input has to be two 3D MITK images. The order of the inputs matter! The first input has to be the Hb image the second input has to be the HbO2 image. The settings are integer values. The SO2 threshold therefore is percentage value.

Output: The output will be one MITK image. Where one can see the oxygen saturation of all pixels above the set threholds. If a pixel is below a threhold or NAN then the value will be set to zero.

UPDATE: SO2 Filter will get an second output, the total hemoglobin value with ->GetOutput(1).

Definition at line 41 of file mitkPASpectralUnmixingSO2.h.

Constructor & Destructor Documentation

◆ SpectralUnmixingSO2()

mitk::pa::SpectralUnmixingSO2::SpectralUnmixingSO2 ( )
protected

Constructor sets number of input images to two and number of output images to one, respectively.

Definition at line 20 of file mitkPASpectralUnmixingSO2.cpp.

References mitk::Image::New().

◆ ~SpectralUnmixingSO2()

mitk::pa::SpectralUnmixingSO2::~SpectralUnmixingSO2 ( )
overrideprotected

Definition at line 29 of file mitkPASpectralUnmixingSO2.cpp.

Member Function Documentation

◆ AddSO2Settings()

void mitk::pa::SpectralUnmixingSO2::AddSO2Settings ( int  value)
virtual

AddSO2Settings takes integers and writes them at the end of the m_SO2Settings vector.

Parameters
valueof the Setting

Definition at line 164 of file mitkPASpectralUnmixingSO2.cpp.

References m_SO2Settings.

◆ mitkClassMacro()

mitk::pa::SpectralUnmixingSO2::mitkClassMacro ( SpectralUnmixingSO2  ,
mitk::ImageToImageFilter   
)

◆ New()

static Pointer mitk::pa::SpectralUnmixingSO2::New ( )
static

Referenced by main().

◆ Verbose()

void mitk::pa::SpectralUnmixingSO2::Verbose ( bool  verbose)
virtual

Verbose gives more information to the console. Default value is false.

Parameters
m_Verboseis the boolian to activate the MITK_INFO logged to the console

Definition at line 34 of file mitkPASpectralUnmixingSO2.cpp.

References mitk::ImageWriteAccessor::GetData(), mitk::ImageAccessorBase::GetData(), mitk::Image::GetDimensions(), mitk::ImageToImageFilter::GetInput(), mitk::ImageSource::GetOutput(), m_Verbose, MITK_INFO, MITK_WARN, mitkThrow, and verbose().

Member Data Documentation

◆ m_SO2Settings

std::vector<int> mitk::pa::SpectralUnmixingSO2::m_SO2Settings
protected

Definition at line 66 of file mitkPASpectralUnmixingSO2.h.

Referenced by AddSO2Settings().

◆ m_Verbose

bool mitk::pa::SpectralUnmixingSO2::m_Verbose
protected

Definition at line 67 of file mitkPASpectralUnmixingSO2.h.

Referenced by Verbose().


The documentation for this class was generated from the following files: