Medical Imaging Interaction Toolkit  2018.4.99-3e3f1a6e
Medical Imaging Interaction Toolkit
mitk::USImage Class Reference

This specialization of mitk::Image only appends necessary Metadata to an MITK image. Otherwise it can safely be treated like it's mother class. To generate an USImage from a standard mitkImage, call the appropriate constructor USImage(image::Pointer) More...

#include <mitkUSImage.h>

Inheritance diagram for mitk::USImage:
Collaboration diagram for mitk::USImage:

Public Member Functions

 mitkClassMacro (USImage, mitk::Image)
 
Pointer Clone () const
 
 mitkNewMacro1Param (Self, mitk::Image::Pointer)
 this constructor creates an US Image identical to the recieved mitkImage. The Metadata are set to default. The image data is shared, so don't continue to manipulate the original image. More...
 
mitk::USImageMetadata::Pointer GetMetadata () const
 Reads out this image's Metadata set from the properties and returns a corresponding USImageMetadata object. More...
 
void SetMetadata (mitk::USImageMetadata::Pointer metadata)
 Writes the information of the metadata object into the image's properties. More...
 
- Public Member Functions inherited from mitk::Image
virtual std::vector< std::string > GetClassHierarchy () const override
 
virtual const char * GetClassName () const
 
Pointer Clone () const
 
const mitk::PixelType GetPixelType (int n=0) const
 Returns the PixelType of channel n. More...
 
unsigned int GetDimension () const
 Get dimension of the image. More...
 
unsigned int GetDimension (int i) const
 Get the size of dimension i (e.g., i=0 results in the number of pixels in x-direction). More...
 
virtual void * GetData ()
 Get the data vector of the complete image, i.e., of all channels linked together. More...
 
double GetPixelValueByIndex (const itk::Index< 3 > &position, unsigned int timestep=0, unsigned int component=0)
 Get the pixel value at one specific index position. More...
 
double GetPixelValueByWorldCoordinate (const mitk::Point3D &position, unsigned int timestep=0, unsigned int component=0)
 Get the pixel value at one specific world position. More...
 
virtual vtkImageData * GetVtkImageData (int t=0, int n=0)
 Get a volume at a specific time t of channel n as a vtkImageData. More...
 
virtual const vtkImageData * GetVtkImageData (int t=0, int n=0) const
 
bool IsSliceSet (int s=0, int t=0, int n=0) const override
 Get the complete image, i.e., all channels linked together, as a mitkIpPicDescriptor. More...
 
bool IsVolumeSet (int t=0, int n=0) const override
 Check whether volume at time t in channel n is set. More...
 
bool IsChannelSet (int n=0) const override
 Check whether the channel n is set. More...
 
virtual bool SetSlice (const void *data, int s=0, int t=0, int n=0)
 Set data as slice s at time t in channel n. It is in the responsibility of the caller to ensure that the data vector data is really a slice (at least is not smaller than a slice), since there is no chance to check this. More...
 
virtual bool SetVolume (const void *data, int t=0, int n=0)
 Set data as volume at time t in channel n. It is in the responsibility of the caller to ensure that the data vector data is really a volume (at least is not smaller than a volume), since there is no chance to check this. More...
 
virtual bool SetChannel (const void *data, int n=0)
 Set data in channel n. It is in the responsibility of the caller to ensure that the data vector data is really a channel (at least is not smaller than a channel), since there is no chance to check this. More...
 
virtual bool SetImportSlice (void *data, int s=0, int t=0, int n=0, ImportMemoryManagementType importMemoryManagement=CopyMemory)
 Set data as slice s at time t in channel n. It is in the responsibility of the caller to ensure that the data vector data is really a slice (at least is not smaller than a slice), since there is no chance to check this. More...
 
virtual bool SetImportVolume (void *data, int t=0, int n=0, ImportMemoryManagementType importMemoryManagement=CopyMemory)
 Set data as volume at time t in channel n. It is in the responsibility of the caller to ensure that the data vector data is really a volume (at least is not smaller than a volume), since there is no chance to check this. More...
 
virtual bool SetImportVolume (const void *const_data, int t=0, int n=0)
 
virtual bool SetImportChannel (void *data, int n=0, ImportMemoryManagementType importMemoryManagement=CopyMemory)
 Set data in channel n. It is in the responsibility of the caller to ensure that the data vector data is really a channel (at least is not smaller than a channel), since there is no chance to check this. More...
 
virtual void Initialize (const mitk::PixelType &type, unsigned int dimension, const unsigned int *dimensions, unsigned int channels=1)
 
virtual void Initialize (const mitk::PixelType &type, const mitk::BaseGeometry &geometry, unsigned int channels=1, int tDim=1)
 
virtual void Initialize (const mitk::PixelType &, const mitk::TimeSlicedGeometry *, unsigned int, int)
 
virtual void Initialize (const mitk::PixelType &type, const mitk::TimeGeometry &geometry, unsigned int channels=1, int tDim=-1)
 Initialize new (or re-initialize) image information by a TimeGeometry. More...
 
virtual void Initialize (const mitk::PixelType &type, int sDim, const mitk::PlaneGeometry &geometry2d, bool flipped, unsigned int channels=1, int tDim=1)
 
virtual void Initialize (const mitk::PixelType &type, int sDim, const mitk::PlaneGeometry &geometry2d, unsigned int channels=1, int tDim=1)
 
virtual void Initialize (const mitk::Image *image)
 
virtual void Initialize (const mitk::ImageDescriptor::Pointer inDesc)
 
virtual void Initialize (vtkImageData *vtkimagedata, int channels=1, int tDim=-1, int sDim=-1, int pDim=-1)
 
template<typename itkImageType >
void InitializeByItk (const itkImageType *itkimage, int channels=1, int tDim=-1, int sDim=-1)
 
virtual bool IsValidSlice (int s=0, int t=0, int n=0) const
 Check whether slice s at time t in channel n is valid, i.e., is (or can be) inside of the image. More...
 
virtual bool IsValidVolume (int t=0, int n=0) const
 Check whether volume at time t in channel n is valid, i.e., is (or can be) inside of the image. More...
 
virtual bool IsValidChannel (int n=0) const
 Check whether the channel n is valid, i.e., is (or can be) inside of the image. More...
 
bool IsRotated () const
 Returns true if an image is rotated, i.e. its geometry's transformation matrix has nonzero elements besides the diagonal. Non-diagonal elements are checked if larger then 1/1000 of the matrix' trace. More...
 
unsigned int * GetDimensions () const
 Get the sizes of all dimensions as an integer-array. More...
 
ImageDescriptor::Pointer GetImageDescriptor () const
 
ChannelDescriptor GetChannelDescriptor (int id=0) const
 
void SetGeometry (BaseGeometry *aGeometry3D) override
 Sets a geometry to an image. More...
 
virtual ImageDataItemPointer GetSliceData (int s=0, int t=0, int n=0, void *data=nullptr, ImportMemoryManagementType importMemoryManagement=CopyMemory) const
 
virtual ImageDataItemPointer GetVolumeData (int t=0, int n=0, void *data=nullptr, ImportMemoryManagementType importMemoryManagement=CopyMemory) const
 
virtual ImageDataItemPointer GetChannelData (int n=0, void *data=nullptr, ImportMemoryManagementType importMemoryManagement=CopyMemory) const
 
ScalarType GetScalarValueMin (int t=0) const
 (DEPRECATED) Get the minimum for scalar images More...
 
ScalarType GetScalarValueMax (int t=0) const
 (DEPRECATED) Get the maximum for scalar images More...
 
ScalarType GetScalarValue2ndMin (int t=0) const
 (DEPRECATED) Get the second smallest value for scalar images More...
 
ScalarType GetScalarValueMinNoRecompute (unsigned int t=0) const
 (DEPRECATED) Get the smallest value for scalar images, but do not recompute it first More...
 
ScalarType GetScalarValue2ndMinNoRecompute (unsigned int t=0) const
 (DEPRECATED) Get the second smallest value for scalar images, but do not recompute it first More...
 
ScalarType GetScalarValue2ndMax (int t=0) const
 (DEPRECATED) Get the second largest value for scalar images More...
 
ScalarType GetScalarValueMaxNoRecompute (unsigned int t=0) const
 (DEPRECATED) Get the largest value for scalar images, but do not recompute it first More...
 
ScalarType GetScalarValue2ndMaxNoRecompute (unsigned int t=0) const
 (DEPRECATED) Get the second largest value for scalar images, but do not recompute it first More...
 
ScalarType GetCountOfMinValuedVoxels (int t=0) const
 (DEPRECATED) Get the count of voxels with the smallest scalar value in the dataset More...
 
ScalarType GetCountOfMaxValuedVoxels (int t=0) const
 (DEPRECATED) Get the count of voxels with the largest scalar value in the dataset More...
 
unsigned int GetCountOfMaxValuedVoxelsNoRecompute (unsigned int t=0) const
 (DEPRECATED) Get the count of voxels with the largest scalar value in the dataset More...
 
unsigned int GetCountOfMinValuedVoxelsNoRecompute (unsigned int t=0) const
 (DEPRECATED) Get the count of voxels with the smallest scalar value in the dataset More...
 
StatisticsHolderPointer GetStatistics () const
 Returns a pointer to the ImageStatisticsHolder object that holds all statistics information for the image. More...
 
- Public Member Functions inherited from mitk::SlicedData
 itkStaticConstMacro (RegionDimension, unsigned int, 5)
 
void UpdateOutputInformation () override
 
void PrepareForNewData () override
 
void SetRequestedRegionToLargestPossibleRegion () override
 
bool RequestedRegionIsOutsideOfTheBufferedRegion () override
 
bool VerifyRequestedRegion () override
 Verify that the RequestedRegion is within the LargestPossibleRegion. More...
 
void SetRequestedRegion (const itk::DataObject *data) override
 
virtual void SetRequestedRegion (SlicedData::RegionType *region)
 
void SetLargestPossibleRegion (SlicedData::RegionType *region)
 Sets the largest possible region. The largest possible region is the entire region occupied by the data object. Note that the largest possible region should always be bigger then the requested region of a certain operation. More...
 
const RegionTypeGetLargestPossibleRegion () const
 
virtual const RegionTypeGetRequestedRegion () const
 
void CopyInformation (const itk::DataObject *data) override
 
unsigned int GetNumberOfChannels () const
 Get the number of channels. More...
 
SlicedGeometry3DGetSlicedGeometry (unsigned int t=0) const
 Convenience access method for the geometry, which is of type SlicedGeometry3D (or a sub-class of it). More...
 
const SlicedGeometry3DGetUpdatedSlicedGeometry (unsigned int t=0)
 Convenience access method for the geometry, which is of type SlicedGeometry3D (or a sub-class of it). More...
 
void SetGeometry (BaseGeometry *aGeometry3D) override
 Set the BaseGeometry of the data, which will be referenced (not copied!). It has to be a sub-class of SlicedGeometry3D. More...
 
void SetOrigin (const Point3D &origin) override
 Convenience method for setting the origin of the SlicedGeometry3D instances of all time steps. More...
 
virtual void SetSpacing (const ScalarType aSpacing[])
 Convenience method for setting the spacing of the SlicedGeometry3D instances of all time steps. More...
 
virtual void SetSpacing (mitk::Vector3D aSpacing)
 Convenience method for setting the spacing of the SlicedGeometry3D instances of all time steps. More...
 
- Public Member Functions inherited from mitk::BaseData
BaseProperty::ConstPointer GetConstProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=true) const override
 Get property by its key. More...
 
std::vector< std::string > GetPropertyKeys (const std::string &contextName="", bool includeDefaultContext=false) const override
 Query keys of existing properties. More...
 
std::vector< std::string > GetPropertyContextNames () const override
 Query names of existing contexts. More...
 
BasePropertyGetNonConstProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=true) override
 Get property by its key. More...
 
void SetProperty (const std::string &propertyKey, BaseProperty *property, const std::string &contextName="", bool fallBackOnDefaultContext=false) override
 Add new or change existent property. More...
 
void RemoveProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=false) override
 Removes a property. If the property does not exist, nothing will be done. More...
 
const mitk::TimeGeometryGetTimeGeometry () const
 Return the TimeGeometry of the data as const pointer. More...
 
const mitk::TimeGeometryGetTimeSlicedGeometry () const
 Return the TimeGeometry of the data as const pointer. More...
 
mitk::TimeGeometryGetTimeGeometry ()
 Return the TimeGeometry of the data as pointer. More...
 
const mitk::TimeGeometryGetUpdatedTimeGeometry ()
 Return the TimeGeometry of the data. More...
 
const mitk::TimeGeometryGetUpdatedTimeSliceGeometry ()
 Return the TimeGeometry of the data. More...
 
const mitk::BaseGeometryGetUpdatedGeometry (int t=0)
 Return the BaseGeometry of the data at time t. More...
 
mitk::BaseGeometryGetGeometry (int t=0) const
 Return the geometry, which is a TimeGeometry, of the data as non-const pointer. More...
 
void UpdateOutputInformation () override
 Update the information for this BaseData (the geometry in particular) so that it can be used as an output of a BaseProcess. More...
 
void CopyInformation (const itk::DataObject *data) override
 Copy information from the specified data set. More...
 
virtual bool IsInitialized () const
 Check whether the data has been initialized, i.e., at least the Geometry and other header data has been set. More...
 
virtual bool IsEmptyTimeStep (unsigned int t) const
 Check whether object contains data (at a specified time), e.g., a set of points may be empty. More...
 
virtual bool IsEmpty () const
 Check whether object contains data (at least at one point in time), e.g., a set of points may be empty. More...
 
void ExecuteOperation (Operation *operation) override
 overwrite if the Data can be called by an Interactor (StateMachine). More...
 
virtual void SetTimeGeometry (TimeGeometry *geometry)
 Set the TimeGeometry of the data, which will be referenced (not copied!). More...
 
virtual void SetClonedGeometry (const BaseGeometry *aGeometry3D)
 Set a clone of the provided Geometry as Geometry of the data. Assumes the data object has only 1 time step ( is a 3D object ) and creates a new TimeGeometry. If an TimeGeometry has already been set for the object, it will be replaced after calling this function. More...
 
virtual void SetClonedTimeGeometry (const TimeGeometry *geometry)
 Set a clone of the provided TimeGeometry as TimeGeometry of the data. More...
 
virtual void SetClonedGeometry (const BaseGeometry *aGeometry3D, unsigned int time)
 Set a clone of the provided geometry as BaseGeometry of a given time step. More...
 
mitk::PropertyList::Pointer GetPropertyList () const
 Get the data's property list. More...
 
void SetPropertyList (PropertyList *propertyList)
 Set the data's property list. More...
 
mitk::BaseProperty::Pointer GetProperty (const char *propertyKey) const
 Get the property (instance of BaseProperty) with key propertyKey from the PropertyList, and set it to this, respectively;. More...
 
void SetProperty (const char *propertyKey, BaseProperty *property)
 
itk::SmartPointer< mitk::BaseDataSourceGetSource () const
 Get the process object that generated this data object. More...
 
unsigned int GetTimeSteps () const
 Get the number of time steps from the TimeGeometry As the base data has not a data vector given by itself, the number of time steps is defined over the time sliced geometry. In sub classes, a better implementation could be over the length of the data vector. More...
 
unsigned long GetMTime () const override
 Get the modified time of the last change of the contents this data object or its geometry. More...
 
void Graft (const DataObject *) override
 
- Public Member Functions inherited from mitk::OperationActor
 itkTypeMacroNoParent (OperationActor) virtual ~OperationActor()
 
- Public Member Functions inherited from mitk::Identifiable
 Identifiable ()
 
 Identifiable (const UIDType &uid)
 
 Identifiable (const Identifiable &)=delete
 
 Identifiable (Identifiable &&) noexcept
 
virtual ~Identifiable ()
 
Identifiableoperator= (const Identifiable &)=delete
 
Identifiableoperator= (Identifiable &&other) noexcept
 
UIDType GetUID () const
 Get unique ID of an object. More...
 
- Public Member Functions inherited from mitk::IPropertyOwner
 ~IPropertyOwner () override
 
- Public Member Functions inherited from mitk::IPropertyProvider
virtual ~IPropertyProvider ()
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from mitk::Image
static const char * GetStaticNameOfClass ()
 
static Pointer New ()
 
- Static Public Member Functions inherited from mitk::SlicedData
static const char * GetStaticNameOfClass ()
 
- Static Public Member Functions inherited from mitk::BaseData
static const char * GetStaticNameOfClass ()
 

Protected Member Functions

 USImage ()
 This constructor creates an empty USImage. The Metadata are set to default. More...
 
 USImage (mitk::Image::Pointer image)
 this constructor creates an US Image identical to the recieved mitkImage. The Metadata are set to default. The image data is shared, so don't continue to manipulate the original image. More...
 
 ~USImage () override
 
- Protected Member Functions inherited from mitk::Image
virtual itk::LightObject::Pointer InternalClone () const override
 
int GetSliceIndex (int s=0, int t=0, int n=0) const
 
int GetVolumeIndex (int t=0, int n=0) const
 
void ComputeOffsetTable ()
 
virtual bool IsValidTimeStep (int t) const
 
void Expand (unsigned int timeSteps) override
 Expands the TimeGeometry to a number of TimeSteps. More...
 
virtual ImageDataItemPointer AllocateSliceData (int s=0, int t=0, int n=0, void *data=nullptr, ImportMemoryManagementType importMemoryManagement=CopyMemory) const
 
virtual ImageDataItemPointer AllocateVolumeData (int t=0, int n=0, void *data=nullptr, ImportMemoryManagementType importMemoryManagement=CopyMemory) const
 
virtual ImageDataItemPointer AllocateChannelData (int n=0, void *data=nullptr, ImportMemoryManagementType importMemoryManagement=CopyMemory) const
 
 Image ()
 
 Image (const Image &other)
 
 ~Image () override
 
void Clear () override
 Calls ClearData() and InitializeEmpty();. More...
 
void Initialize () override
 
void PrintSelf (std::ostream &os, itk::Indent indent) const override
 
- Protected Member Functions inherited from mitk::SlicedData
 SlicedData ()
 
 SlicedData (const SlicedData &other)
 
 ~SlicedData () override
 
- Protected Member Functions inherited from mitk::BaseData
 BaseData ()
 
 BaseData (const BaseData &other)
 
 ~BaseData () override
 
virtual void InitializeTimeGeometry (unsigned int timeSteps=1)
 Initialize the TimeGeometry for a number of time steps. The TimeGeometry is initialized empty and evenly timed. In many cases it will be necessary to overwrite this in sub-classes. More...
 
virtual void InitializeTimeSlicedGeometry (unsigned int timeSteps=1)
 Initialize the TimeGeometry for a number of time steps. The TimeGeometry is initialized empty and evenly timed. In many cases it will be necessary to overwrite this in sub-classes. More...
 
virtual void ClearData ()
 reset to non-initialized state, release memory More...
 
virtual void InitializeEmpty ()
 Pure virtual; Must be used in subclasses to get a data object to a valid state. Should at least create one empty object and call Superclass::InitializeTimeGeometry() to ensure an existing valid geometry. More...
 
void PrintSelf (std::ostream &os, itk::Indent indent) const override
 

Additional Inherited Members

- Public Types inherited from mitk::Image
enum  ImportMemoryManagementType { CopyMemory, ManageMemory, ReferenceMemory, DontManageMemory }
 
typedef Image Self
 
typedef SlicedData Superclass
 
typedef itk::SmartPointer< SelfPointer
 
typedef itk::SmartPointer< const SelfConstPointer
 
typedef itk::SmartPointer< ImageDataItemImageDataItemPointer
 
typedef itk::Statistics::Histogram< double > HistogramType
 
typedef mitk::ImageStatisticsHolderStatisticsHolderPointer
 
typedef std::vector< ImageDataItemPointerImageDataItemPointerArray
 Vector container of SmartPointers to ImageDataItems; Class is only for internal usage to allow convenient access to all slices over iterators; See documentation of ImageDataItem for details. More...
 
- Public Types inherited from mitk::SlicedData
typedef SlicedData Self
 
typedef BaseData Superclass
 
typedef itk::SmartPointer< SelfPointer
 
typedef itk::SmartPointer< const SelfConstPointer
 
typedef itk::ImageRegion< RegionDimension > RegionType
 
typedef itk::Index< RegionDimension > IndexType
 
typedef IndexType::IndexValueType IndexValueType
 
typedef itk::Offset< RegionDimension > OffsetType
 
typedef OffsetType::OffsetValueType OffsetValueType
 
typedef itk::Size< RegionDimension > SizeType
 
typedef SizeType::SizeValueType SizeValueType
 
- Public Types inherited from mitk::BaseData
typedef BaseData Self
 
typedef itk::DataObject Superclass
 
typedef itk::SmartPointer< SelfPointer
 
typedef itk::SmartPointer< const SelfConstPointer
 
- Public Types inherited from mitk::Identifiable
using UIDType = std::string
 
- Protected Types inherited from mitk::Image
typedef itk::MutexLockHolder< itk::SimpleFastMutexLock > MutexHolder
 
- Protected Attributes inherited from mitk::Image
ImageDataItemPointerArray m_Channels
 
ImageDataItemPointerArray m_Volumes
 
ImageDataItemPointerArray m_Slices
 
itk::SimpleFastMutexLock m_ImageDataArraysLock
 
unsigned int m_Dimension
 
unsigned int * m_Dimensions
 
ImageDescriptor::Pointer m_ImageDescriptor
 
vcl_size_t * m_OffsetTable
 
ImageDataItemPointer m_CompleteData
 
StatisticsHolderPointer m_ImageStatistics
 
- Protected Attributes inherited from mitk::SlicedData
RegionType m_LargestPossibleRegion
 
RegionType m_RequestedRegion
 
bool m_RequestedRegionInitialized
 
RegionType m_BufferedRegion
 
bool m_UseLargestPossibleRegion
 
- Protected Attributes inherited from mitk::BaseData
bool m_LastRequestedRegionWasOutsideOfTheBufferedRegion
 
unsigned int m_SourceOutputIndexDuplicate
 
bool m_Initialized
 

Detailed Description

This specialization of mitk::Image only appends necessary Metadata to an MITK image. Otherwise it can safely be treated like it's mother class. To generate an USImage from a standard mitkImage, call the appropriate constructor USImage(image::Pointer)

DocumentationZ

Deprecated:
Deprecated since 2014-06 -> use mitk::Image instead

Definition at line 31 of file mitkUSImage.h.

Constructor & Destructor Documentation

◆ USImage() [1/2]

mitk::USImage::USImage ( )
protected

This constructor creates an empty USImage. The Metadata are set to default.

Definition at line 19 of file mitkUSImage.cpp.

References mitk::USImageMetadata::New(), and SetMetadata().

◆ USImage() [2/2]

mitk::USImage::USImage ( mitk::Image::Pointer  image)
protected

this constructor creates an US Image identical to the recieved mitkImage. The Metadata are set to default. The image data is shared, so don't continue to manipulate the original image.

Definition at line 24 of file mitkUSImage.cpp.

References mitk::Image::Initialize(), mitkReThrow, and mitk::Image::SetVolume().

◆ ~USImage()

mitk::USImage::~USImage ( )
overrideprotected

Definition at line 38 of file mitkUSImage.cpp.

Member Function Documentation

◆ Clone()

Pointer mitk::USImage::Clone ( ) const

◆ GetMetadata()

◆ mitkClassMacro()

mitk::USImage::mitkClassMacro ( USImage  ,
mitk::Image   
)

◆ mitkNewMacro1Param()

mitk::USImage::mitkNewMacro1Param ( Self  ,
mitk::Image::Pointer   
)

this constructor creates an US Image identical to the recieved mitkImage. The Metadata are set to default. The image data is shared, so don't continue to manipulate the original image.

Exceptions
mitk::ExceptionThrows an exception if there is a problem with access to the data while constructing the image.

◆ New()

static Pointer mitk::USImage::New ( )
static

◆ SetMetadata()


The documentation for this class was generated from the following files: