mitk::GenericParamModel Class Reference

#include <mitkGenericParamModel.h>

Inheritance diagram for mitk::GenericParamModel:

Collaboration diagram for mitk::GenericParamModel:

Public Types
typedef GenericParamModel	Self
typedef mitk::ModelBase	Superclass
typedef itk::SmartPointer< Self >	Pointer
typedef itk::SmartPointer< const Self >	ConstPointer
typedef Superclass::ParameterNameType	ParameterNameType
typedef Superclass::ParametersSizeType	ParametersSizeType
Public Types inherited from mitk::ModelBase
typedef ModelBase	Self
typedef itk::Object	Superclass
typedef itk::SmartPointer< Self >	Pointer
typedef itk::SmartPointer< const Self >	ConstPointer
typedef ModelTraitsInterface::ModelResultType	ModelResultType
typedef ModelTraitsInterface::ParameterValueType	ParameterValueType
typedef ModelTraitsInterface::ParametersType	ParametersType
typedef itk::Array< double >	TimeGridType
typedef ModelTraitsInterface::ParameterNameType	ParameterNameType
typedef ModelTraitsInterface::ParameterNamesType	ParameterNamesType
typedef ModelTraitsInterface::ParametersSizeType	ParametersSizeType
typedef ModelTraitsInterface::DerivedParameterNamesType	DerivedParameterNamesType
typedef ModelTraitsInterface::DerivedParametersSizeType	DerivedParametersSizeType
typedef double	StaticParameterValueType
typedef std::vector< StaticParameterValueType >	StaticParameterValuesType
typedef std::map< ParameterNameType, StaticParameterValuesType >	StaticParameterMapType
typedef double	DerivedParameterValueType
typedef std::map< ParameterNameType, DerivedParameterValueType >	DerivedParameterMapType
Public Types inherited from mitk::ModelTraitsInterface
typedef itk::Array< double >	ModelResultType
using	ParameterValueType = double
typedef itk::Array< ParameterValueType >	ParametersType
typedef std::string	ParameterNameType
typedef std::vector< ParameterNameType >	ParameterNamesType
typedef ParametersType::SizeValueType	ParametersSizeType
typedef ParameterNamesType	DerivedParameterNamesType
typedef ParametersSizeType	DerivedParametersSizeType
typedef std::map< ParameterNameType, double >	ParamterScaleMapType
typedef std::map< ParameterNameType, std::string >	ParamterUnitMapType
typedef std::map< ParameterNameType, double >	DerivedParamterScaleMapType
typedef std::map< ParameterNameType, std::string >	DerivedParamterUnitMapType
typedef std::string	FunctionStringType
typedef std::string	ModellClassIDType

Public Member Functions
Pointer	Clone () const
virtual const char *	GetClassName () const
std::string	GetModelDisplayName () const override
std::string	GetModelType () const override
FunctionStringType	GetFunctionString () const override
virtual void	SetFunctionString (const char *_arg)
virtual void	SetNumberOfParameters (ParametersSizeType _arg)
std::string	GetXName () const override
ParameterNamesType	GetParameterNames () const override
ParametersSizeType	GetNumberOfParameters () const override
ParameterNamesType	GetStaticParameterNames () const override
ParametersSizeType	GetNumberOfStaticParameters () const override
Public Member Functions inherited from mitk::ModelBase
ParamterScaleMapType	GetParameterScales () const override
ParamterUnitMapType	GetParameterUnits () const override
DerivedParamterScaleMapType	GetDerivedParameterScales () const override
DerivedParamterUnitMapType	GetDerivedParameterUnits () const override
std::string	GetModelDisplayName () const override
std::string	GetModelType () const override
FunctionStringType	GetFunctionString () const override
ModellClassIDType	GetClassID () const override
std::string	GetXName () const override
std::string	GetXAxisName () const override
std::string	GetXAxisUnit () const override
std::string	GetYAxisName () const override
std::string	GetYAxisUnit () const override
virtual ParamterUnitMapType	GetStaticParameterUnits () const
DerivedParameterNamesType	GetDerivedParameterNames () const override
DerivedParametersSizeType	GetNumberOfDerivedParameters () const override
void	SetStaticParameters (const StaticParameterMapType &parameters, bool allParameters=true)
StaticParameterMapType	GetStaticParameters () const
DerivedParameterMapType	GetDerivedParameters (const ParametersType &parameters) const
virtual void	SetTimeGrid (const TimeGridType &grid)
virtual const TimeGridType &	GetTimeGrid ()
ModelResultType	GetSignal (const ParametersType &parameters) const

Static Public Member Functions
static Pointer	New ()

Static Public Attributes
static const std::string	NAME_STATIC_PARAMETER_number

Protected Member Functions
	GenericParamModel ()
	~GenericParamModel () override
itk::LightObject::Pointer	InternalClone () const override
ModelResultType	ComputeModelfunction (const ParametersType &parameters) const override
void	SetStaticParameter (const ParameterNameType &name, const StaticParameterValuesType &values) override
StaticParameterValuesType	GetStaticParameterValue (const ParameterNameType &name) const override
Protected Member Functions inherited from mitk::ModelBase
virtual bool	ValidateModel (std::string &error) const
virtual DerivedParameterMapType	ComputeDerivedParameters (const ParametersType &parameters) const
	ModelBase ()
	~ModelBase () override
void	PrintSelf (std::ostream &os, ::itk::Indent indent) const override
Protected Member Functions inherited from mitk::ModelTraitsInterface
	ModelTraitsInterface ()
virtual	~ModelTraitsInterface ()

Additional Inherited Members
Protected Attributes inherited from mitk::ModelBase
TimeGridType	m_TimeGrid

Detailed Description

Model that can parse a user specified function string and uses it as model function that is represented by the model instance. The parser used to interpret the string can handle simple mathematical formulas (e.g. "3.5 + a * x * sin(x) - 1 / 2"). The parser is able to recognize:

• sums, differences, products and divisions (a + b, 4 - 3, 2 * x, 9 / 3)
• algebraic signs ( +5, -5)
• exponentiation ( 2 ^ 4 )
• parentheses (3 * (4 + 2))
• following unary functions: abs, exp, sin, cos, tan, sind (sine in degrees), cosd (cosine in degrees), tand (tangent in degrees)
• variables (x, a, b, ... j)

Remark: The variable "x" is reserved. It is the signal position / timepoint. Remark: The current version supports up to 10 model parameter. Don't use it for a model parameter that should be deduced by fitting (these are a..j).

Definition at line 37 of file mitkGenericParamModel.h.

Member Typedef Documentation

ConstPointer

typedef itk::SmartPointer< const Self > mitk::GenericParamModel::ConstPointer

Definition at line 44 of file mitkGenericParamModel.h.

ParameterNameType

typedef Superclass::ParameterNameType mitk::GenericParamModel::ParameterNameType

Definition at line 46 of file mitkGenericParamModel.h.

ParametersSizeType

typedef Superclass::ParametersSizeType mitk::GenericParamModel::ParametersSizeType

Definition at line 47 of file mitkGenericParamModel.h.

Pointer

typedef itk::SmartPointer< Self > mitk::GenericParamModel::Pointer

Definition at line 43 of file mitkGenericParamModel.h.

Self

typedef GenericParamModel mitk::GenericParamModel::Self

Definition at line 41 of file mitkGenericParamModel.h.

Superclass

typedef mitk::ModelBase mitk::GenericParamModel::Superclass

Definition at line 42 of file mitkGenericParamModel.h.

Constructor & Destructor Documentation

GenericParamModel()

mitk::GenericParamModel::GenericParamModel ( )

protected

~GenericParamModel()

mitk::GenericParamModel::~GenericParamModel ( )

inlineoverrideprotected

Definition at line 80 of file mitkGenericParamModel.h.

Member Function Documentation

Clone()

Pointer mitk::GenericParamModel::Clone

(

)

const

ComputeModelfunction()

ModelResultType mitk::GenericParamModel::ComputeModelfunction ( const ParametersType &  parameters ) const

overrideprotectedvirtual

Implements mitk::ModelBase.

GetClassName()

virtual const char* mitk::GenericParamModel::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from mitk::ModelBase.

GetFunctionString()

FunctionStringType mitk::GenericParamModel::GetFunctionString ( ) const

overridevirtual

Implements mitk::ModelTraitsInterface.

GetModelDisplayName()

std::string mitk::GenericParamModel::GetModelDisplayName ( ) const

overridevirtual

Implements mitk::ModelTraitsInterface.

GetModelType()

std::string mitk::GenericParamModel::GetModelType ( ) const

overridevirtual

Implements mitk::ModelTraitsInterface.

GetNumberOfParameters()

ParametersSizeType mitk::GenericParamModel::GetNumberOfParameters ( ) const

overridevirtual

Returns the number of parameters that must be defined when using the model to compute the signal (GetSignal()).

Implements mitk::ModelTraitsInterface.

GetNumberOfStaticParameters()

ParametersSizeType mitk::GenericParamModel::GetNumberOfStaticParameters ( ) const

overridevirtual

Returns the number of static parameters that will be used when using the model to compute the signal (but are not defined via GetSignal()).

Implements mitk::ModelBase.

GetParameterNames()

ParameterNamesType mitk::GenericParamModel::GetParameterNames ( ) const

overridevirtual

Returns the names of parameters that must be defined when using the model to compute the signal (GetSignal()).

Implements mitk::ModelTraitsInterface.

GetStaticParameterNames()

ParameterNamesType mitk::GenericParamModel::GetStaticParameterNames ( ) const

overridevirtual

Returns the names of static parameters that will be used when using the model to compute the signal (but are not defined via GetSignal()).

Implements mitk::ModelBase.

GetStaticParameterValue()

StaticParameterValuesType mitk::GenericParamModel::GetStaticParameterValue ( const ParameterNameType &  name ) const

overrideprotectedvirtual

Helper function called by GetStaticParameters(). Implement in derived classes to realize the concrete retrieval of static parameters.

Implements mitk::ModelBase.

GetXName()

std::string mitk::GenericParamModel::GetXName ( ) const

overridevirtual

Implements mitk::ModelTraitsInterface.

InternalClone()

itk::LightObject::Pointer mitk::GenericParamModel::InternalClone ( ) const

overrideprotected

Actual implementation of the clone method. This method should be reimplemeted in subclasses to clone the extra required parameters.

New()

static Pointer mitk::GenericParamModel::New ( )

static

Method for creation through the object factory.

SetFunctionString()

virtual void mitk::GenericParamModel::SetFunctionString ( const char *  _arg )

virtual

SetNumberOfParameters()

virtual void mitk::GenericParamModel::SetNumberOfParameters ( ParametersSizeType  _arg )

virtual

Precondition

The Number of paremeters must be between 1 and 10.

SetStaticParameter()

void mitk::GenericParamModel::SetStaticParameter ( const ParameterNameType &  name, const StaticParameterValuesType &  values  )

overrideprotectedvirtual

Helper function called by SetStaticParameters(). Implement in derived classes to realize the concrete setting of static parameters.

Implements mitk::ModelBase.

Member Data Documentation

NAME_STATIC_PARAMETER_number

const std::string mitk::GenericParamModel::NAME_STATIC_PARAMETER_number

static

Definition at line 54 of file mitkGenericParamModel.h.

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The documentation for this class was generated from the following file:

• mitkGenericParamModel.h