Medical Imaging Interaction Toolkit  2018.4.99-b7f3afaa
Medical Imaging Interaction Toolkit
MRSignal2ConcentrationMiniApp.cpp File Reference
#include <string>
#include "itksys/SystemTools.hxx"
#include "mitkCommandLineParser.h"
#include <mitkIOUtil.h>
#include <mitkImageTimeSelector.h>
#include <mitkImageCast.h>
#include <mitkPreferenceListReaderOptionsFunctor.h>
#include <mitkModelFitUIDHelper.h>
#include <mitkConcentrationCurveGenerator.h>

Go to the source code of this file.

Functions

bool verbose (false)
 
bool t1_absolute (false)
 
bool t1_relative (false)
 
bool t1_flash (false)
 
bool t2 (false)
 
float k (1.0)
 
float te (0)
 
float rec_time (0)
 
float relaxivity (0)
 
float rel_time (0)
 
void setupParser (mitkCommandLineParser &parser)
 
bool configureApplicationSettings (std::map< std::string, us::Any > parsedArgs)
 
void doConversion ()
 
int main (int argc, char *argv[])
 

Variables

std::string inFilename
 
std::string outFileName
 
mitk::Image::Pointer image
 

Function Documentation

◆ configureApplicationSettings()

bool configureApplicationSettings ( std::map< std::string, us::Any parsedArgs)

◆ doConversion()

◆ k()

float k ( 1.  0)

Referenced by mitk::SliceNavigationController::AdjustSliceStepperRange(), mitk::OpenIGTLinkTrackingDevice::AutoDetectTools(), mitk::Line< double, 2 >::BoxLineIntersection(), CalculateFeatures(), CalculateLargestDiameter(), mitk::CovarianceMatrixCalculator::ComputeOrthonormalCoordinateSystem(), configureApplicationSettings(), mitk::NDIAuroraTypeInformation::CreateTrackingDeviceSource(), doConversion(), mitk::ThresholdSplit< TColumnDecisionFunctor, TFeatureCalculator, TTag >::findBestSplit(), mitk::CollectionReader::FolderToCollection(), mitk::CollectionWriter::FolderToXml(), mitk::ExtrudePlanarFigureFilter::GenerateData(), mitk::ComputeContourSetNormalsFilter::GenerateData(), mitk::ReduceContourSetFilter::GenerateData(), mitk::RegionGrowingTool::GetNeighborhoodAverage(), GetNeighboursOfPoint(), mitk::VigraRandomForestClassifier::GetTreeWeights(), info(), mitk::Image::IsRotated(), LocalCalculateFeatures(), main(), multiclass_probability(), QmitkAdaptiveRegionGrowingToolGUI::OnPointAdded(), mitk::VectorImageMapper2D::Paint(), QmitkSliderLevelWindowWidget::paintEvent(), mitk::LegacyFileReaderService::Read(), QmitkFiducialRegistrationWidget::Register(), mitk::SurfaceInterpolationController::ReinitializeInterpolation(), mitk::ThresholdSplit< TColumnDecisionFunctor, TFeatureCalculator, TTag >::set_external_parameters(), mitk::LevelWindow::SetAuto(), QmitkToolDistanceWidget::ShowDistanceValues(), mitk::CollectionWriter::SingleFolderToXml(), mitk::pa::SpectralUnmixingFilterVigra::SpectralUnmixingAlgorithm(), mitk::SurfaceStampImageFilter::SurfaceStamp(), svm_binary_svc_probability(), svm_cross_validation(), svm_load_model(), svm_predict_probability(), svm_predict_values(), svm_train(), mitk::Transform::ToCSVString(), mitk::Transform::ToMatlabString(), mitk::AnisotropicIterativeClosestPointRegistration::Update(), mitk::ToFCameraPMDRawDataDevice::XYAxisFlipImage(), and mitk::pa::SpectralUnmixingFilterSimplex::~SpectralUnmixingFilterSimplex().

◆ main()

◆ rec_time()

float rec_time ( )

◆ rel_time()

float rel_time ( )

◆ relaxivity()

◆ setupParser()

◆ t1_absolute()

bool t1_absolute ( false  )

◆ t1_flash()

bool t1_flash ( false  )

◆ t1_relative()

bool t1_relative ( false  )

◆ t2()

◆ te()

float te ( )

◆ verbose()

bool verbose ( false  )

Variable Documentation

◆ image

Definition at line 34 of file MRSignal2ConcentrationMiniApp.cpp.

◆ inFilename

std::string inFilename

Definition at line 31 of file MRSignal2ConcentrationMiniApp.cpp.

Referenced by configureApplicationSettings(), and main().

◆ outFileName

std::string outFileName

Definition at line 32 of file MRSignal2ConcentrationMiniApp.cpp.

Referenced by configureApplicationSettings(), and doConversion().