Medical Imaging Interaction Toolkit  2016.11.0
Medical Imaging Interaction Toolkit
mitkDiffusionImageCreationFilter.h
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1 /*===================================================================
2 
3 The Medical Imaging Interaction Toolkit (MITK)
4 
5 Copyright (c) German Cancer Research Center,
6 Division of Medical and Biological Informatics.
7 All rights reserved.
8 
9 This software is distributed WITHOUT ANY WARRANTY; without
10 even the implied warranty of MERCHANTABILITY or FITNESS FOR
11 A PARTICULAR PURPOSE.
12 
13 See LICENSE.txt or http://www.mitk.org for details.
14 
15 ===================================================================*/
16 
17 #ifndef DIFFUSIONIMAGECREATIONFILTER_H
18 #define DIFFUSIONIMAGECREATIONFILTER_H
19 
20 #include "mitkImageToImageFilter.h"
23 
24 namespace mitk
25 {
26 
31 {
33  : m_GradientDirections(nullptr)
34  {
35  m_BValue = -1;
36  }
37 
38  float m_BValue;
42 };
43 
55  : public ImageToImageFilter
56 {
57 public:
61 
62  itkNewMacro(Self)
63 
64  typedef short DiffusionPixelType;
66 
67  typedef mitk::Image OutputType;
71  typedef mitk::DiffusionPropertyHelper::GradientDirectionsContainerType GradientDirectionContainerType;
72 
77  void SetReferenceImage( mitk::Image::Pointer reference_image );
78 
85  void SetHeaderDescriptor( DiffusionImageHeaderDescriptor header_descriptor );
86 
87  virtual void GenerateData() override;
88 protected:
90  ~DiffusionImageCreationFilter();
91 
92  GradientDirectionContainerType::Pointer InternalGetGradientDirections( );
93  MeasurementFrameType InternalGetMeasurementFrame();
94  float InternalGetBValue();
95 
96  VectorImageType::Pointer RemapIntoVectorImage( mitk::Image::Pointer input);
97 
98  mitk::Image::Pointer m_ReferenceImage;
99 
100  DiffusionImageHeaderDescriptor m_HeaderDescriptor;
101  bool m_HeaderDescriptorSet;
102 };
103 
104 } //end namespace mitk
105 
106 #endif // DIFFUSIONIMAGECREATIONFILTER_H
mitk::DiffusionPropertyHelper::MeasurementFrameType m_MeasurementFrame
The DiffusionImageCreationFilter class creates a diffusion-weighted image out of a given 3D+t regular...
itk::SmartPointer< Self > Pointer
Base of all data objects.
Definition: mitkBaseData.h:39
Superclass of all classes generating some kind of mitk::BaseData.
Helper class for mitk::Images containing diffusion weighted data.
DataCollection - Class to facilitate loading/accessing structured data.
mitk::BValueMapProperty::BValueMap BValueMapType
#define MITKDIFFUSIONCORE_EXPORT
mitk::DiffusionPropertyHelper::GradientDirectionsContainerType::Pointer m_GradientDirections
map::core::discrete::Elements< 3 >::InternalImageType ImageType
#define mitkClassMacro(className, SuperClassName)
Definition: mitkCommon.h:44
Image class for storing images.
Definition: mitkImage.h:76
mitk::DiffusionPropertyHelper::BValueMapType m_BValueMapType
Superclass of all classes having one or more Images as input and generating Images as output...
The DiffusionImageHeaderDescriptor struct bundles the necessary diffusion-weighted image header meta ...
mitk::DiffusionPropertyHelper::ImageType VectorImageType
mitk::MeasurementFrameProperty::MeasurementFrameType MeasurementFrameType
mitk::DiffusionPropertyHelper::MeasurementFrameType MeasurementFrameType
mitk::DiffusionPropertyHelper::GradientDirectionType GradientDirectionType
mitk::DiffusionPropertyHelper::GradientDirectionsContainerType GradientDirectionContainerType