#include <mitkVigraRandomForestClassifier.h>

Inheritance diagram for mitk::VigraRandomForestClassifier:

Collaboration diagram for mitk::VigraRandomForestClassifier:

Public Member Functions
	mitkClassMacro (VigraRandomForestClassifier, AbstractClassifier) static Pointer New()

Pointer	Clone () const

	VigraRandomForestClassifier ()

	~VigraRandomForestClassifier ()

void	Train (const Eigen::MatrixXd &X, const Eigen::MatrixXi &Y)

void	OnlineTrain (const Eigen::MatrixXd &X, const Eigen::MatrixXi &Y)

Eigen::MatrixXi	Predict (const Eigen::MatrixXd &X)

Eigen::MatrixXi	PredictWeighted (const Eigen::MatrixXd &X)

bool	SupportsPointWiseWeight ()
	SupportsPointWiseWeight. More...

bool	SupportsPointWiseProbability ()
	SupportsPointWiseProbability. More...

void	ConvertParameter ()

void	SetRandomForest (const vigra::RandomForest< int > &rf)

const vigra::RandomForest< int > &	GetRandomForest () const

void	UsePointWiseWeight (bool)
	UsePointWiseWeight. More...

void	SetMaximumTreeDepth (int)

void	SetMinimumSplitNodeSize (int)

void	SetPrecision (double)

void	SetSamplesPerTree (double)

void	UseSampleWithReplacement (bool)

void	SetTreeCount (int)

void	SetWeightLambda (double)

void	SetTreeWeights (Eigen::MatrixXd weights)

void	SetTreeWeight (int treeId, double weight)

Eigen::MatrixXd	GetTreeWeights () const

void	PrintParameter (std::ostream &str=std::cout)

Public Member Functions inherited from mitk::AbstractClassifier
Eigen::MatrixXi &	GetLabels ()
	GetPointWiseWeightCopy. More...

virtual Eigen::MatrixXd &	GetPointWiseWeight ()
	GetPointWiseWeightCopy. More...

virtual void	SetPointWiseWeight (const Eigen::MatrixXd &W)
	SetPointWiseWeight. More...

virtual bool	IsUsingPointWiseWeight ()
	IsUsingPointWiseWeight. More...

virtual Eigen::MatrixXd &	GetPointWiseProbabilities ()
	GetPointWiseWeightCopy. More...

virtual void	UsePointWiseProbability (bool value)
	UsePointWiseProbabilities. More...

virtual bool	IsUsingPointWiseProbability ()
	IsUsingPointWiseProbabilities. More...

void	SetNthItems (const char *val, unsigned int idx)

std::string	GetNthItems (unsigned int idx) const

void	SetItemList (std::vector< std::string >)

std::vector< std::string >	GetItemList () const

virtual void	SetRequestedRegionToLargestPossibleRegion ()
	Set the RequestedRegion to the LargestPossibleRegion. More...

virtual bool	RequestedRegionIsOutsideOfTheBufferedRegion ()
	Determine whether the RequestedRegion is outside of the BufferedRegion. More...

virtual bool	VerifyRequestedRegion ()
	Verify that the RequestedRegion is within the LargestPossibleRegion. More...

virtual void	SetRequestedRegion (const itk::DataObject *)
	Set the requested region from this data object to match the requested region of the data object passed in as a parameter. More...

virtual bool	IsEmpty () const override
	Check whether object contains data (at least at one point in time), e.g., a set of points may be empty. More...

Public Member Functions inherited from mitk::BaseData
virtual std::vector< std::string >	GetClassHierarchy () const

virtual const char *	GetClassName () const

const mitk::TimeGeometry *	GetTimeGeometry () const
	Return the TimeGeometry of the data as const pointer. More...

const mitk::TimeGeometry *	GetTimeSlicedGeometry () const
	Return the TimeGeometry of the data as const pointer. More...

mitk::TimeGeometry *	GetTimeGeometry ()
	Return the TimeGeometry of the data as pointer. More...

const mitk::TimeGeometry *	GetUpdatedTimeGeometry ()
	Return the TimeGeometry of the data. More...

const mitk::TimeGeometry *	GetUpdatedTimeSliceGeometry ()
	Return the TimeGeometry of the data. More...

virtual void	Expand (unsigned int timeSteps)
	Expands the TimeGeometry to a number of TimeSteps. More...

const mitk::BaseGeometry *	GetUpdatedGeometry (int t=0)
	Return the BaseGeometry of the data at time t. More...

mitk::BaseGeometry *	GetGeometry (int t=0) const
	Return the geometry, which is a TimeGeometry, of the data as non-const pointer. More...

void	UpdateOutputInformation () override
	Update the information for this BaseData (the geometry in particular) so that it can be used as an output of a BaseProcess. More...

void	CopyInformation (const itk::DataObject *data) override
	Copy information from the specified data set. More...

virtual bool	IsInitialized () const
	Check whether the data has been initialized, i.e., at least the Geometry and other header data has been set. More...

virtual void	Clear ()
	Calls ClearData() and InitializeEmpty();. More...

virtual bool	IsEmptyTimeStep (unsigned int t) const
	Check whether object contains data (at a specified time), e.g., a set of points may be empty. More...

void	ExecuteOperation (Operation *operation) override
	overwrite if the Data can be called by an Interactor (StateMachine). More...

virtual void	SetGeometry (BaseGeometry *aGeometry3D)
	Set the BaseGeometry of the data, which will be referenced (not copied!). Assumes the data object has only 1 time step ( is a 3D object ) and creates a new TimeGeometry which saves the given BaseGeometry. If an TimeGeometry has already been set for the object, it will be replaced after calling this function. More...

virtual void	SetTimeGeometry (TimeGeometry *geometry)
	Set the TimeGeometry of the data, which will be referenced (not copied!). More...

virtual void	SetClonedGeometry (const BaseGeometry *aGeometry3D)
	Set a clone of the provided TimeGeometry as TimeGeometry of the data. Assumes the data object has only 1 time step ( is a 3D object ) and creates a new TimeGeometry. If an TimeGeometry has already been set for the object, it will be replaced after calling this function. More...

virtual void	SetClonedTimeGeometry (const TimeGeometry *geometry)
	Set a clone of the provided TimeGeometry as TimeGeometry of the data. More...

virtual void	SetClonedGeometry (const BaseGeometry *aGeometry3D, unsigned int time)
	Set a clone of the provided geometry as BaseGeometry of a given time step. More...

mitk::PropertyList::Pointer	GetPropertyList () const
	Get the data's property list. More...

void	SetPropertyList (PropertyList *propertyList)
	Set the data's property list. More...

mitk::BaseProperty::Pointer	GetProperty (const char *propertyKey) const
	Get the property (instance of BaseProperty) with key propertyKey from the PropertyList, and set it to this, respectively;. More...

void	SetProperty (const char propertyKey, BaseProperty property)

virtual void	SetOrigin (const Point3D &origin)
	Convenience method for setting the origin of the BaseGeometry instances of all time steps. More...

itk::SmartPointer< mitk::BaseDataSource >	GetSource () const
	Get the process object that generated this data object. More...

unsigned int	GetTimeSteps () const
	Get the number of time steps from the TimeGeometry As the base data has not a data vector given by itself, the number of time steps is defined over the time sliced geometry. In sub classes, a better implementation could be over the length of the data vector. More...

virtual unsigned long	GetMTime () const override
	Get the modified time of the last change of the contents this data object or its geometry. More...

virtual void	Graft (const DataObject *) override

Public Member Functions inherited from mitk::OperationActor
	itkTypeMacroNoParent (OperationActor) virtual ~OperationActor()

Additional Inherited Members
Public Types inherited from mitk::BaseData
typedef BaseData	Self

typedef itk::DataObject	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

Static Public Member Functions inherited from mitk::BaseData
static const char *	GetStaticNameOfClass ()

Protected Member Functions inherited from mitk::BaseData
	BaseData ()

	BaseData (const BaseData &other)

	~BaseData ()

virtual void	InitializeTimeGeometry (unsigned int timeSteps=1)
	Initialize the TimeGeometry for a number of time steps. The TimeGeometry is initialized empty and evenly timed. In many cases it will be necessary to overwrite this in sub-classes. More...

virtual void	InitializeTimeSlicedGeometry (unsigned int timeSteps=1)
	Initialize the TimeGeometry for a number of time steps. The TimeGeometry is initialized empty and evenly timed. In many cases it will be necessary to overwrite this in sub-classes. More...

virtual void	ClearData ()
	reset to non-initialized state, release memory More...

virtual void	InitializeEmpty ()
	Pure virtual; Must be used in subclasses to get a data object to a valid state. Should at least create one empty object and call Superclass::InitializeTimeGeometry() to ensure an existing valid geometry. More...

virtual void	PrintSelf (std::ostream &os, itk::Indent indent) const override

Protected Attributes inherited from mitk::AbstractClassifier
Eigen::MatrixXi	m_OutLabel

Eigen::MatrixXd	m_PointWiseWeight

bool	m_IsUsingPointWiseWeight

Eigen::MatrixXd	m_OutProbability

bool	m_IsUsingPointWiseProbability

Protected Attributes inherited from mitk::BaseData
bool	m_LastRequestedRegionWasOutsideOfTheBufferedRegion

unsigned int	m_SourceOutputIndexDuplicate

bool	m_Initialized