mitk::TbssImporter Class Reference

Converts FSL TBSS data (4D skeleton projection images) to a NRRD image with meta data. More...

#include <mitkTbssImporter.h>

Inheritance diagram for mitk::TbssImporter:

Collaboration diagram for mitk::TbssImporter:

Public Types
typedef itk::VectorImage< float, 3 >	DataImageType

Public Member Functions
	mitkClassMacroItkParent (TbssImporter, itk::Object) static Pointer New()
Pointer	Clone () const
mitk::TbssImage::Pointer	Import ()
	Converts the FSL Nifty to NRRD and adds the meta data. More...
template<typename TPixel >
void	Import (const mitk::PixelType pixelType, mitk::TbssImage::Pointer tbssImg)
void	SetGroupInfo (std::vector< std::pair< std::string, int > > groups)
	Group info is set by providing a vector with pairs of group name and number. More...
void	SetMeasurementInfo (std::string s)
	Used to indicate the type of measurement. More...
void	SetImportVolume (mitk::Image::Pointer inputVolume)
	Sets the FSL import volume. More...

Protected Member Functions
	TbssImporter ()
virtual	~TbssImporter ()

Protected Attributes
DataImageType::Pointer	m_Data
std::vector< std::pair< std::string, int > >	m_Groups
std::string	m_MeasurementInfo
mitk::Image::Pointer	m_InputVolume

Detailed Description

Converts FSL TBSS data (4D skeleton projection images) to a NRRD image with meta data.

The TBSS pipeline of FSL produces a 4D image containing the 3D skeleton projections of all individuals. This class converts the FSL Nifty image to NRRD and adds information about the type of measurement and the study groups.

Definition at line 40 of file mitkTbssImporter.h.

Member Typedef Documentation

typedef itk::VectorImage<float,3> mitk::TbssImporter::DataImageType

Definition at line 45 of file mitkTbssImporter.h.

Constructor & Destructor Documentation

mitk::TbssImporter::TbssImporter ( )

inlineprotected

Definition at line 77 of file mitkTbssImporter.h.

virtual mitk::TbssImporter::~TbssImporter ( )

inlineprotectedvirtual

Definition at line 79 of file mitkTbssImporter.h.

Member Function Documentation

Pointer mitk::TbssImporter::Clone

(

)

const

TbssImage::Pointer mitk::TbssImporter::Import

(

)

Converts the FSL Nifty to NRRD and adds the meta data.

Definition at line 27 of file mitkTbssImporter.cpp.

References m_InputVolume, mitkPixelTypeMultiplex1, and mitk::Image::New().

template<typename TPixel >

void mitk::TbssImporter::Import	(	const mitk::PixelType	pixelType,
		mitk::TbssImage::Pointer	tbssImg
	)

Definition at line 35 of file mitkTbssImporter.cpp.

References mitk::BaseGeometry::GetIndexToWorldTransform(), mitk::BaseGeometry::GetOrigin(), mitk::ImagePixelReadAccessor< TPixel, VDimension >::GetPixelByIndex(), mitk::BaseGeometry::GetSpacing(), m_Data, m_Groups, m_InputVolume, m_MeasurementInfo, MITK_ERROR, MITK_INFO, and mitk::New().

mitk::TbssImporter::mitkClassMacroItkParent	(	TbssImporter	,
		itk::Object
	)

void mitk::TbssImporter::SetGroupInfo ( std::vector< std::pair< std::string, int > >  groups )

inline

Group info is set by providing a vector with pairs of group name and number.

Definition at line 58 of file mitkTbssImporter.h.

void mitk::TbssImporter::SetImportVolume ( mitk::Image::Pointer  inputVolume )

inline

Sets the FSL import volume.

Definition at line 70 of file mitkTbssImporter.h.

void mitk::TbssImporter::SetMeasurementInfo ( std::string  s )

inline

Used to indicate the type of measurement.

Definition at line 64 of file mitkTbssImporter.h.

Member Data Documentation

DataImageType::Pointer mitk::TbssImporter::m_Data

protected

Definition at line 81 of file mitkTbssImporter.h.

Referenced by Import().

std::vector< std::pair<std::string, int> > mitk::TbssImporter::m_Groups

protected

Definition at line 83 of file mitkTbssImporter.h.

Referenced by Import().

mitk::Image::Pointer mitk::TbssImporter::m_InputVolume

protected

Definition at line 87 of file mitkTbssImporter.h.

Referenced by Import().

std::string mitk::TbssImporter::m_MeasurementInfo

protected

Definition at line 85 of file mitkTbssImporter.h.

Referenced by Import().

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The documentation for this class was generated from the following files:

• mitkTbssImporter.h
• mitkTbssImporter.cpp