#include <mitkPartialVolumeAnalysisClusteringCalculator.h>

Inheritance diagram for mitk::PartialVolumeAnalysisClusteringCalculator:

Collaboration diagram for mitk::PartialVolumeAnalysisClusteringCalculator:

Classes
class	ClusterResultType

struct	HelperStructClusteringResults

struct	HelperStructPerformClusteringRetval

struct	HelperStructPerformRGBClusteringRetval

struct	HelperStructRGBChannels

class	HistType

class	ParamsType

Public Types
typedef vnl_vector< double >	VecType

typedef mitk::Image::HistogramType	MitkHistType

Public Member Functions
	mitkClassMacroItkParent (PartialVolumeAnalysisClusteringCalculator, itk::Object) static Pointer New()

Pointer	Clone () const

ParamsType *	InitialGuess (HistType h) const

ParamsType *	Cluster (const HistType h, ParamsType *initialGuess) const

ClusterResultType	CalculateCurves (ParamsType params, VecType xVals) const

void	Normalize (ParamsType params, ClusterResultType *curves) const

HelperStructPerformClusteringRetval *	PerformClustering (mitk::Image::ConstPointer image, const MitkHistType histogram, int classIdent, HelperStructPerformClusteringRetval precResult=nullptr) const

HelperStructPerformRGBClusteringRetval *	PerformRGBClustering (mitk::Image::ConstPointer image, const MitkHistType *histogram) const

HelperStructPerformClusteringRetval *	PerformQuantiles (mitk::Image::ConstPointer image, const MitkHistType *histogram, double p1, double p2) const

HelperStructPerformRGBClusteringRetval *	PerformRGBQuantiles (mitk::Image::ConstPointer image, const MitkHistType *histogram, double p1, double p2) const

double *	PerformQuantification (mitk::Image::ConstPointer image, mitk::Image::Pointer clusteredImage, mitk::Image::Pointer mask=nullptr) const

mitk::Image::Pointer	CaculateAngularErrorImage (mitk::Image::Pointer comp1, mitk::Image::Pointer comp2, mitk::Image::Pointer probImg) const

template<unsigned int VImageDimension>
void	InternalGenerateRGB (HelperStructRGBChannels *rgb, mitk::Image::Pointer retval) const

template<typename TPixel , unsigned int VImageDimension>
void	InternalGenerateProbabilityImage (const itk::Image< TPixel, VImageDimension > *image, const HelperStructClusteringResults clusterResults, mitk::Image::Pointer outImage1, mitk::Image::Pointer outImage2) const

template<typename TPixel , unsigned int VImageDimension>
void	InternalQuantify (const itk::Image< TPixel, VImageDimension > image, mitk::Image::Pointer clusteredImage, double retval, mitk::Image::Pointer mask) const

template<typename TPixel , unsigned int VImageDimension>
void	InternalGenerateQuantileImage (const itk::Image< TPixel, VImageDimension > image, double q, mitk::Image::Pointer outImage1, mitk::Image::Pointer outImage2) const

ParamsType *	Cluster (const HistType h) const

void	SetMaxIt (unsigned int it)

unsigned int	GetMaxIt ()

void	SetStepsNumIntegration (unsigned int n)

unsigned int	GetStepsNumIntegration ()

Protected Member Functions
	PartialVolumeAnalysisClusteringCalculator ()

virtual	~PartialVolumeAnalysisClusteringCalculator ()

Protected Attributes
unsigned int	m_MaxIt

unsigned int	m_StepsNumIntegration

Detailed Description

Definition at line 36 of file mitkPartialVolumeAnalysisClusteringCalculator.h.

Member Typedef Documentation

typedef mitk::Image::HistogramType mitk::PartialVolumeAnalysisClusteringCalculator::MitkHistType

Definition at line 41 of file mitkPartialVolumeAnalysisClusteringCalculator.h.

typedef vnl_vector<double> mitk::PartialVolumeAnalysisClusteringCalculator::VecType

Definition at line 40 of file mitkPartialVolumeAnalysisClusteringCalculator.h.

Constructor & Destructor Documentation

mitk::PartialVolumeAnalysisClusteringCalculator::PartialVolumeAnalysisClusteringCalculator ( )

protected

Definition at line 33 of file mitkPartialVolumeAnalysisClusteringCalculator.cpp.

mitk::PartialVolumeAnalysisClusteringCalculator::~PartialVolumeAnalysisClusteringCalculator ( )

protectedvirtual

Definition at line 39 of file mitkPartialVolumeAnalysisClusteringCalculator.cpp.

Member Function Documentation

mitk::Image::Pointer mitk::PartialVolumeAnalysisClusteringCalculator::CaculateAngularErrorImage	(	mitk::Image::Pointer	comp1,
		mitk::Image::Pointer	comp2,
		mitk::Image::Pointer	probImg
	)		const

Definition at line 693 of file mitkPartialVolumeAnalysisClusteringCalculator.cpp.

References mitk::New(), and mitk::Image::New().

PartialVolumeAnalysisClusteringCalculator::ClusterResultType mitk::PartialVolumeAnalysisClusteringCalculator::CalculateCurves	(	ParamsType	params,
		VecType	xVals
	)		const

Definition at line 193 of file mitkPartialVolumeAnalysisClusteringCalculator.cpp.

References mitk::PartialVolumeAnalysisClusteringCalculator::ClusterResultType::combiVals, m_StepsNumIntegration, mitk::PartialVolumeAnalysisClusteringCalculator::ParamsType::means, mitk::PartialVolumeAnalysisClusteringCalculator::ClusterResultType::mixedVals, mitk::PartialVolumeAnalysisClusteringCalculator::ParamsType::ps, PVA_PI, mitk::PartialVolumeAnalysisClusteringCalculator::ParamsType::sigmas, and mitk::PartialVolumeAnalysisClusteringCalculator::ClusterResultType::vals.

Referenced by Cluster(), and PerformClustering().

Pointer mitk::PartialVolumeAnalysisClusteringCalculator::Clone ( ) const

PartialVolumeAnalysisClusteringCalculator::ParamsType * mitk::PartialVolumeAnalysisClusteringCalculator::Cluster	(	const HistType	h,
		ParamsType *	initialGuess
	)		const

Definition at line 61 of file mitkPartialVolumeAnalysisClusteringCalculator.cpp.

References CalculateCurves(), mitk::PartialVolumeAnalysisClusteringCalculator::ClusterResultType::combiVals, mitk::PartialVolumeAnalysisClusteringCalculator::HistType::hVals, m_MaxIt, mitk::PartialVolumeAnalysisClusteringCalculator::ClusterResultType::mixedVals, mitk::PartialVolumeAnalysisClusteringCalculator::ClusterResultType::vals, and mitk::PartialVolumeAnalysisClusteringCalculator::HistType::xVals.

Referenced by PerformClustering().

ParamsType* mitk::PartialVolumeAnalysisClusteringCalculator::Cluster ( const HistType h ) const

inline

Definition at line 477 of file mitkPartialVolumeAnalysisClusteringCalculator.h.

unsigned int mitk::PartialVolumeAnalysisClusteringCalculator::GetMaxIt ( )

inline

Definition at line 483 of file mitkPartialVolumeAnalysisClusteringCalculator.h.

unsigned int mitk::PartialVolumeAnalysisClusteringCalculator::GetStepsNumIntegration ( )

inline

Definition at line 489 of file mitkPartialVolumeAnalysisClusteringCalculator.h.

PartialVolumeAnalysisClusteringCalculator::ParamsType * mitk::PartialVolumeAnalysisClusteringCalculator::InitialGuess ( HistType h ) const

Definition at line 44 of file mitkPartialVolumeAnalysisClusteringCalculator.cpp.

References mitk::PartialVolumeAnalysisClusteringCalculator::HistType::xVals.

template<typename TPixel , unsigned int VImageDimension>

void mitk::PartialVolumeAnalysisClusteringCalculator::InternalGenerateProbabilityImage	(	const itk::Image< TPixel, VImageDimension > *	image,
		const HelperStructClusteringResults	clusterResults,
		mitk::Image::Pointer	outImage1,
		mitk::Image::Pointer	outImage2
	)		const

Definition at line 497 of file mitkPartialVolumeAnalysisClusteringCalculator.cpp.

References mitk::PartialVolumeAnalysisClusteringCalculator::HelperStructClusteringResults::interestingHist, MITK_ERROR, mitk::New(), mitk::PartialVolumeAnalysisClusteringCalculator::HelperStructClusteringResults::p_interesting, and mitk::PartialVolumeAnalysisClusteringCalculator::HelperStructClusteringResults::totalHist.

Referenced by PerformClustering().

template<typename TPixel , unsigned int VImageDimension>

void mitk::PartialVolumeAnalysisClusteringCalculator::InternalGenerateQuantileImage	(	const itk::Image< TPixel, VImageDimension > *	image,
		double *	q,
		mitk::Image::Pointer	outImage1,
		mitk::Image::Pointer	outImage2
	)		const

Definition at line 918 of file mitkPartialVolumeAnalysisClusteringCalculator.cpp.

References mitk::New().

Referenced by PerformQuantiles().

template<unsigned int VImageDimension>

void mitk::PartialVolumeAnalysisClusteringCalculator::InternalGenerateRGB	(	HelperStructRGBChannels *	rgb,
		mitk::Image::Pointer	retval
	)		const

Definition at line 289 of file mitkPartialVolumeAnalysisClusteringCalculator.cpp.

References mitk::PartialVolumeAnalysisClusteringCalculator::HelperStructRGBChannels::g, mitk::New(), and mitk::PartialVolumeAnalysisClusteringCalculator::HelperStructRGBChannels::r.

template<typename TPixel , unsigned int VImageDimension>

void mitk::PartialVolumeAnalysisClusteringCalculator::InternalQuantify	(	const itk::Image< TPixel, VImageDimension > *	image,
		mitk::Image::Pointer	clusteredImage,
		double *	retval,
		mitk::Image::Pointer	mask
	)		const

Definition at line 617 of file mitkPartialVolumeAnalysisClusteringCalculator.cpp.

References mitk::New().

Referenced by PerformQuantification().

mitk::PartialVolumeAnalysisClusteringCalculator::mitkClassMacroItkParent	(	PartialVolumeAnalysisClusteringCalculator	,
		itk::Object
	)

void mitk::PartialVolumeAnalysisClusteringCalculator::Normalize	(	ParamsType	params,
		ClusterResultType *	curves
	)		const

Definition at line 163 of file mitkPartialVolumeAnalysisClusteringCalculator.cpp.

References mitk::PartialVolumeAnalysisClusteringCalculator::ClusterResultType::combiVals, mitk::PartialVolumeAnalysisClusteringCalculator::ClusterResultType::mixedVals, mitk::PartialVolumeAnalysisClusteringCalculator::ParamsType::ps, and mitk::PartialVolumeAnalysisClusteringCalculator::ClusterResultType::vals.

Referenced by PerformClustering().

PartialVolumeAnalysisClusteringCalculator::HelperStructPerformClusteringRetval * mitk::PartialVolumeAnalysisClusteringCalculator::PerformClustering	(	mitk::Image::ConstPointer	image,
		const MitkHistType *	histogram,
		int	classIdent,
		HelperStructPerformClusteringRetval *	precResult = `nullptr`
	)		const

Definition at line 376 of file mitkPartialVolumeAnalysisClusteringCalculator.cpp.

References AccessFixedDimensionByItk_3, CalculateCurves(), Cluster(), mitk::PartialVolumeAnalysisClusteringCalculator::ParamsType::Initialize(), mitk::PartialVolumeAnalysisClusteringCalculator::HelperStructClusteringResults::interestingHist, InternalGenerateProbabilityImage(), max(), min(), mitk::New(), mitk::Image::New(), Normalize(), mitk::PartialVolumeAnalysisClusteringCalculator::HelperStructClusteringResults::p_interesting, mitk::PartialVolumeAnalysisClusteringCalculator::HelperStructPerformClusteringRetval::params, mitk::PartialVolumeAnalysisClusteringCalculator::HelperStructPerformClusteringRetval::result, and mitk::PartialVolumeAnalysisClusteringCalculator::HelperStructClusteringResults::totalHist.

Referenced by PerformRGBClustering().

double * mitk::PartialVolumeAnalysisClusteringCalculator::PerformQuantification	(	mitk::Image::ConstPointer	image,
		mitk::Image::Pointer	clusteredImage,
		mitk::Image::Pointer	mask = `nullptr`
	)		const

Definition at line 599 of file mitkPartialVolumeAnalysisClusteringCalculator.cpp.

References AccessFixedDimensionByItk_3, and InternalQuantify().

PartialVolumeAnalysisClusteringCalculator::HelperStructPerformClusteringRetval * mitk::PartialVolumeAnalysisClusteringCalculator::PerformQuantiles	(	mitk::Image::ConstPointer	image,
		const MitkHistType *	histogram,
		double	p1,
		double	p2
	)		const

Definition at line 887 of file mitkPartialVolumeAnalysisClusteringCalculator.cpp.

References AccessFixedDimensionByItk_3, InternalGenerateQuantileImage(), and mitk::Image::New().

Referenced by PerformRGBQuantiles().

PartialVolumeAnalysisClusteringCalculator::HelperStructPerformRGBClusteringRetval * mitk::PartialVolumeAnalysisClusteringCalculator::PerformRGBClustering	(	mitk::Image::ConstPointer	image,
		const MitkHistType *	histogram
	)		const

Definition at line 242 of file mitkPartialVolumeAnalysisClusteringCalculator.cpp.

References mitk::PartialVolumeAnalysisClusteringCalculator::HelperStructPerformClusteringRetval::clusteredImage, mitk::PartialVolumeAnalysisClusteringCalculator::HelperStructPerformClusteringRetval::hist, mitk::Image::New(), mitk::PartialVolumeAnalysisClusteringCalculator::HelperStructPerformClusteringRetval::params, PerformClustering(), and mitk::PartialVolumeAnalysisClusteringCalculator::HelperStructPerformClusteringRetval::result.

PartialVolumeAnalysisClusteringCalculator::HelperStructPerformRGBClusteringRetval * mitk::PartialVolumeAnalysisClusteringCalculator::PerformRGBQuantiles	(	mitk::Image::ConstPointer	image,
		const MitkHistType *	histogram,
		double	p1,
		double	p2
	)		const