#include <mitkLabeledImageToSurfaceFilter.h>

Inheritance diagram for mitk::LabeledImageToSurfaceFilter:

Collaboration diagram for mitk::LabeledImageToSurfaceFilter:

Public Types
typedef int	LabelType

typedef std::map< LabelType, unsigned long >	LabelMapType

typedef std::map< unsigned int, LabelType >	IdxToLabelMapType

Public Types inherited from mitk::ImageToSurfaceFilter
enum	DecimationType { NoDecimation, DecimatePro, QuadricDecimation }

typedef ImageToSurfaceFilter	Self

typedef SurfaceSource	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

Public Types inherited from mitk::SurfaceSource
typedef SurfaceSource	Self

typedef BaseDataSource	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef Surface	OutputType

Public Types inherited from mitk::BaseDataSource
typedef BaseDataSource	Self

typedef itk::ProcessObject	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef BaseData	OutputType

typedef itk::DataObject::DataObjectIdentifierType	DataObjectIdentifierType

Public Member Functions
	mitkClassMacro (LabeledImageToSurfaceFilter, ImageToSurfaceFilter)

Pointer	Clone () const

virtual void	SetGenerateAllLabels (bool _arg)

virtual bool	GetGenerateAllLabels ()

virtual void	GenerateAllLabelsOn ()

virtual void	GenerateAllLabelsOff ()

virtual void	SetLabel (LabelType _arg)

virtual LabelType	GetLabel ()

virtual void	SetBackgroundLabel (LabelType _arg)

virtual LabelType	GetBackgroundLabel ()

virtual void	SetGaussianStandardDeviation (double _arg)

virtual double	GetGaussianStandardDeviation ()

LabelType	GetLabelForNthOutput (const unsigned int &i)

mitk::ScalarType	GetVolumeForNthOutput (const unsigned int &i)

mitk::ScalarType	GetVolumeForLabel (const LabelType &label)

Public Member Functions inherited from mitk::ImageToSurfaceFilter
virtual std::vector< std::string >	GetClassHierarchy () const override

virtual const char *	GetClassName () const

Pointer	Clone () const

const mitk::Image *	GetInput (void)

virtual void	SetInput (const mitk::Image *image)

void	SetSmoothIteration (int smoothIteration)

void	SetSmoothRelaxation (float smoothRelaxation)

virtual void	SetThreshold (ScalarType _arg)

virtual ScalarType	GetThreshold () const

virtual void	SetSmooth (bool _arg)

virtual void	SmoothOn ()

virtual void	SmoothOff ()

virtual bool	GetSmooth () const

virtual DecimationType	GetDecimate () const

virtual void	SetDecimate (DecimationType _arg)

virtual void	SetTargetReduction (float _arg)

virtual float	GetTargetReduction () const

template<class T1 , class T2 , class T3 >
void	mitkVtkLinearTransformPoint (T1 matrix[4][4], T2 in[3], T3 out[3])

Public Member Functions inherited from mitk::SurfaceSource
Pointer	Clone () const

OutputType *	GetOutput ()

const OutputType *	GetOutput () const

OutputType *	GetOutput (DataObjectPointerArraySizeType idx)

const OutputType *	GetOutput (DataObjectPointerArraySizeType idx) const

virtual itk::DataObject::Pointer	MakeOutput (DataObjectPointerArraySizeType idx) override

virtual itk::DataObject::Pointer	MakeOutput (const DataObjectIdentifierType &name) override

Public Member Functions inherited from mitk::BaseDataSource
OutputType *	GetOutput ()

const OutputType *	GetOutput () const

OutputType *	GetOutput (DataObjectPointerArraySizeType idx)

const OutputType *	GetOutput (DataObjectPointerArraySizeType idx) const

virtual void	GraftOutput (OutputType *output)
	Graft the specified BaseData onto this BaseDataSource's output. More...

virtual void	GraftOutput (const DataObjectIdentifierType &key, OutputType *output)

virtual void	GraftNthOutput (unsigned int idx, OutputType *output)
	Graft the specified base data object onto this BaseDataSource's idx'th output. More...

bool	Updating () const
	Access itk::ProcessObject::m_Updating. More...

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from mitk::ImageToSurfaceFilter
static const char *	GetStaticNameOfClass ()

static Pointer	New ()

Static Public Member Functions inherited from mitk::SurfaceSource
static const char *	GetStaticNameOfClass ()

static Pointer	New ()

Static Public Member Functions inherited from mitk::BaseDataSource
static const char *	GetStaticNameOfClass ()

Protected Member Functions
virtual void	GenerateData () override

virtual void	GenerateOutputInformation () override

virtual void	CreateSurface (int time, vtkImageData vtkimage, mitk::Surface surface, LabelType label)

virtual LabelMapType	GetAvailableLabels ()

	LabeledImageToSurfaceFilter ()

virtual	~LabeledImageToSurfaceFilter ()

Protected Member Functions inherited from mitk::ImageToSurfaceFilter
	ImageToSurfaceFilter ()

virtual	~ImageToSurfaceFilter ()

void	CreateSurface (int time, vtkImageData vtkimage, mitk::Surface surface, const ScalarType threshold)

Protected Member Functions inherited from mitk::SurfaceSource
	SurfaceSource ()

virtual	~SurfaceSource ()

Protected Member Functions inherited from mitk::BaseDataSource
	BaseDataSource ()

virtual	~BaseDataSource ()

Protected Attributes
double	m_GaussianStandardDeviation

bool	m_GenerateAllLabels

LabelType	m_Label

LabelType	m_BackgroundLabel

LabelMapType	m_AvailableLabels

IdxToLabelMapType	m_IdxToLabels

Protected Attributes inherited from mitk::ImageToSurfaceFilter
bool	m_Smooth

DecimationType	m_Decimate

ScalarType	m_Threshold

float	m_TargetReduction

int	m_SmoothIteration

float	m_SmoothRelaxation

Additional Inherited Members
Static Protected Member Functions inherited from mitk::BaseDataSource
static Pointer	New ()

Detailed Description

Calculates surfaces for labeled images. If you have a labeled image containing 5 different labeled regions plus the background, this class creates 5 surface representations from the regions. Each surface is assigned to one output of the filter. You can figure out, which label corresponds to which output using the GetLabelForNthOutput() method. If you want to calculate a surface representation only for one specific label, you may call GenerateAllLabelsOff() and set the desired label by SetLabel(label).

Definition at line 38 of file mitkLabeledImageToSurfaceFilter.h.

Member Typedef Documentation

typedef std::map<unsigned int, LabelType> mitk::LabeledImageToSurfaceFilter::IdxToLabelMapType

Definition at line 49 of file mitkLabeledImageToSurfaceFilter.h.

typedef std::map<LabelType, unsigned long> mitk::LabeledImageToSurfaceFilter::LabelMapType

Definition at line 47 of file mitkLabeledImageToSurfaceFilter.h.

typedef int mitk::LabeledImageToSurfaceFilter::LabelType

Definition at line 45 of file mitkLabeledImageToSurfaceFilter.h.

Constructor & Destructor Documentation

mitk::LabeledImageToSurfaceFilter::LabeledImageToSurfaceFilter ( )

protected

Definition at line 34 of file mitkLabeledImageToSurfaceFilter.cpp.

mitk::LabeledImageToSurfaceFilter::~LabeledImageToSurfaceFilter ( )

protectedvirtual

Definition at line 39 of file mitkLabeledImageToSurfaceFilter.cpp.

Member Function Documentation

Pointer mitk::LabeledImageToSurfaceFilter::Clone ( ) const

void mitk::LabeledImageToSurfaceFilter::CreateSurface	(	int	time,
		vtkImageData *	vtkimage,
		mitk::Surface *	surface,
		LabelType	label
	)

protectedvirtual

Definition at line 162 of file mitkLabeledImageToSurfaceFilter.cpp.

References mitk::New(), and mitk::Surface::SetVtkPolyData().

virtual void mitk::LabeledImageToSurfaceFilter::GenerateAllLabelsOff ( )

virtual

virtual void mitk::LabeledImageToSurfaceFilter::GenerateAllLabelsOn ( )

virtual

void mitk::LabeledImageToSurfaceFilter::GenerateData ( )

overrideprotectedvirtual

For each image time slice a surface will be created. This method is called by Update().

Reimplemented from mitk::ImageToSurfaceFilter.

Definition at line 118 of file mitkLabeledImageToSurfaceFilter.cpp.

References mitk::SlicedData::GetRequestedRegion(), and mitk::Image::GetVtkImageData().

void mitk::LabeledImageToSurfaceFilter::GenerateOutputInformation ( )

overrideprotectedvirtual

Initializes the output information ( i.e. the geometry information ) of the output of the filter

Reimplemented from mitk::ImageToSurfaceFilter.

Definition at line 43 of file mitkLabeledImageToSurfaceFilter.cpp.

References mitk::BaseData::GetTimeGeometry().

mitk::LabeledImageToSurfaceFilter::LabelMapType mitk::LabeledImageToSurfaceFilter::GetAvailableLabels ( )

protectedvirtual

Definition at line 310 of file mitkLabeledImageToSurfaceFilter.cpp.

References AccessFixedDimensionByItk_1, and GetAvailableLabelsInternal().

virtual LabelType mitk::LabeledImageToSurfaceFilter::GetBackgroundLabel ( )

virtual

Returns the label of the background. No surface will be generated for this label!

Returns: the label of the background, by default 0

virtual double mitk::LabeledImageToSurfaceFilter::GetGaussianStandardDeviation ( )

virtual

Returns the standard deviation of the Gaussian filter which will be used when filter is enabled.

virtual bool mitk::LabeledImageToSurfaceFilter::GetGenerateAllLabels ( )

virtual

Returns: if all labels or only a specific label should be extracted.

virtual LabelType mitk::LabeledImageToSurfaceFilter::GetLabel ( )

virtual

Returns the label you want to extract. This method only has an effect, if GenerateAllLabels() is set to false

Returns: _arg the label to extract, by default 1

mitk::LabeledImageToSurfaceFilter::LabelType mitk::LabeledImageToSurfaceFilter::GetLabelForNthOutput ( const unsigned int & i )

Lets you retrieve the label which was used for generating the Nth output of this filter. If GenerateAllLabels() is set to false, this filter only knows about the label provided via SetLabel(). All other labels in the image are not known.

Parameters

i	the index of the Nth output.

Returns: the label used for calculating the Nth output of the filter. If i is out of range, itk::NumericLimits<LabelType>::max() is returned.

Definition at line 324 of file mitkLabeledImageToSurfaceFilter.cpp.

References max().

mitk::ScalarType mitk::LabeledImageToSurfaceFilter::GetVolumeForLabel ( const LabelType & label )

Lets you retrieve the volume in milliliters of the region with the given label. If GenerateAllLabels is set to false, you may only call this method for the label provided using the SetLabel() method.

Parameters

label the label of the region you want to get the volume of

Returns: the volume of the region with the given label. If label is invalid, 0.0 is returned.

Definition at line 345 of file mitkLabeledImageToSurfaceFilter.cpp.

References mitk::SlicedData::GetSlicedGeometry(), and mitk::BaseGeometry::GetSpacing().

mitk::ScalarType mitk::LabeledImageToSurfaceFilter::GetVolumeForNthOutput ( const unsigned int & i )

Lets you retrieve the volume in milliliters of the region used to generate the Nth output.

Parameters

i	the index of the Nth output.

Returns: the volume of the region used to generate the Nth output of the filter. If i is out of range, 0.0 is returned.

Definition at line 340 of file mitkLabeledImageToSurfaceFilter.cpp.

mitk::LabeledImageToSurfaceFilter::mitkClassMacro	(	LabeledImageToSurfaceFilter	,
		ImageToSurfaceFilter
	)

static Pointer mitk::LabeledImageToSurfaceFilter::New ( )

static

Referenced by mitkLabeledImageToSurfaceFilterTest().

virtual void mitk::LabeledImageToSurfaceFilter::SetBackgroundLabel ( LabelType _arg )

virtual

Set the label of the background. No surface will be generated for this label!

Parameters

_arg	the label of the background, by default 0

virtual void mitk::LabeledImageToSurfaceFilter::SetGaussianStandardDeviation ( double _arg )

virtual

Set standard deviation for Gaussian Filter.

Parameters

_arg	by default 1.5

virtual void mitk::LabeledImageToSurfaceFilter::SetGenerateAllLabels ( bool _arg )

virtual

Set whether you want to extract all (true) or only a specific label (false)

Parameters

_arg	true by default

virtual void mitk::LabeledImageToSurfaceFilter::SetLabel ( LabelType _arg )

virtual

Set the label you want to extract. This method only has an effect, if GenerateAllLabels() is set to false

Parameters

_arg	the label to extract, by default 1

Member Data Documentation

LabelMapType mitk::LabeledImageToSurfaceFilter::m_AvailableLabels

protected

Definition at line 141 of file mitkLabeledImageToSurfaceFilter.h.

LabelType mitk::LabeledImageToSurfaceFilter::m_BackgroundLabel

protected

Definition at line 139 of file mitkLabeledImageToSurfaceFilter.h.

double mitk::LabeledImageToSurfaceFilter::m_GaussianStandardDeviation

protected

Definition at line 133 of file mitkLabeledImageToSurfaceFilter.h.

bool mitk::LabeledImageToSurfaceFilter::m_GenerateAllLabels

protected

Definition at line 135 of file mitkLabeledImageToSurfaceFilter.h.

IdxToLabelMapType mitk::LabeledImageToSurfaceFilter::m_IdxToLabels

protected

Definition at line 143 of file mitkLabeledImageToSurfaceFilter.h.

LabelType mitk::LabeledImageToSurfaceFilter::m_Label

protected

Definition at line 137 of file mitkLabeledImageToSurfaceFilter.h.

The documentation for this class was generated from the following files:

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation