mitk::DiffusionImageTransformedCreationFilter< TTransformType > Class Template Reference

DiffusionImageTransformedCreationFilter extends its superclass ( DiffusionImageCreationFilter ) by providing the possibility to specify a list of transforms to be applied to the separate volumes before. More...

#include <mitkDiffusionImageTransformedCreationFilter.h>

Inheritance diagram for mitk::DiffusionImageTransformedCreationFilter< TTransformType >:

Collaboration diagram for mitk::DiffusionImageTransformedCreationFilter< TTransformType >:

Public Types
enum	InterpolatorLevel { NearestNeighbor, Trilinear, BSpline_Bicubic, WindowedSinc }
typedef std::vector< typename TTransformType::Pointer >	TransformContainerType
typedef std::vector< typename TTransformType::ParametersType >	TransformParametersContainerType
Public Types inherited from mitk::ImageToImageFilter
typedef ImageToImageFilter	Self
typedef ImageSource	Superclass
typedef itk::SmartPointer< Self >	Pointer
typedef itk::SmartPointer< const Self >	ConstPointer
typedef Superclass::OutputImageRegionType	OutputImageRegionType
typedef mitk::Image	InputImageType
typedef InputImageType::Pointer	InputImagePointer
typedef InputImageType::ConstPointer	InputImageConstPointer
typedef SlicedData::RegionType	InputImageRegionType
Public Types inherited from mitk::ImageSource
typedef ImageSource	Self
typedef BaseDataSource	Superclass
typedef itk::SmartPointer< Self >	Pointer
typedef itk::SmartPointer< const Self >	ConstPointer
typedef mitk::Image	OutputImageType
	Some convenient typedefs. More...
typedef OutputImageType	OutputType
typedef OutputImageType::Pointer	OutputImagePointer
typedef SlicedData::RegionType	OutputImageRegionType
Public Types inherited from mitk::BaseDataSource
typedef BaseDataSource	Self
typedef itk::ProcessObject	Superclass
typedef itk::SmartPointer< Self >	Pointer
typedef itk::SmartPointer< const Self >	ConstPointer
typedef BaseData	OutputType
typedef itk::DataObject::DataObjectIdentifierType	DataObjectIdentifierType

Public Member Functions
	mitkClassMacro (DiffusionImageTransformedCreationFilter, ImageToImageFilter) static Pointer New()
void	SetTransforms (const TransformContainerType &)
void	SetTransformParameters (const TransformParametersContainerType &)
void	SetInterpolationLevel (InterpolatorLevel lvl)
void	GenerateData () override
	A version of GenerateData() specific for image processing filters. More...
void	SetResamplingReferenceImage (mitk::Image::Pointer image)
void	SetReferenceDiffusionImage (mitk::Image::Pointer dwimage)
void	SetOutputPrefix (std::string prefix)
virtual void	GenerateOutputInformation () override
Public Member Functions inherited from mitk::ImageToImageFilter
virtual std::vector< std::string >	GetClassHierarchy () const override
virtual const char *	GetClassName () const
Pointer	Clone () const
virtual void	SetInput (const InputImageType *image)
virtual void	SetInput (unsigned int, const InputImageType *image)
InputImageType *	GetInput (void)
InputImageType *	GetInput (unsigned int idx)
const InputImageType *	GetInput (void) const
const InputImageType *	GetInput (unsigned int idx) const
Public Member Functions inherited from mitk::ImageSource
Pointer	Clone () const
OutputType *	GetOutput ()
	Get the output data of this image source object. More...
const OutputType *	GetOutput () const
OutputType *	GetOutput (DataObjectPointerArraySizeType idx)
const OutputType *	GetOutput (DataObjectPointerArraySizeType idx) const
virtual itk::DataObject::Pointer	MakeOutput (DataObjectPointerArraySizeType idx) override
	Make a DataObject of the correct type to used as the specified output. More...
virtual itk::DataObject::Pointer	MakeOutput (const DataObjectIdentifierType &name) override
virtual vtkImageData *	GetVtkImageData ()
virtual const vtkImageData *	GetVtkImageData () const
Public Member Functions inherited from mitk::BaseDataSource
OutputType *	GetOutput ()
const OutputType *	GetOutput () const
OutputType *	GetOutput (DataObjectPointerArraySizeType idx)
const OutputType *	GetOutput (DataObjectPointerArraySizeType idx) const
virtual void	GraftOutput (OutputType *output)
	Graft the specified BaseData onto this BaseDataSource's output. More...
virtual void	GraftOutput (const DataObjectIdentifierType &key, OutputType *output)
virtual void	GraftNthOutput (unsigned int idx, OutputType *output)
	Graft the specified base data object onto this BaseDataSource's idx'th output. More...
bool	Updating () const
	Access itk::ProcessObject::m_Updating. More...

Protected Types
typedef DiffusionImageCorrectionFilter::TransformMatrixType	MatrixType

Protected Member Functions
	DiffusionImageTransformedCreationFilter ()
	~DiffusionImageTransformedCreationFilter ()
DiffusionImageHeaderDescriptor	GetTransformedHeaderInformation ()
Protected Member Functions inherited from mitk::ImageToImageFilter
	ImageToImageFilter ()
virtual	~ImageToImageFilter ()
virtual void	PrintSelf (std::ostream &os, itk::Indent indent) const override
virtual void	GenerateInputRequestedRegion () override
Protected Member Functions inherited from mitk::ImageSource
	ImageSource ()
virtual	~ImageSource ()
virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, itk::ThreadIdType threadId)
	If an imaging filter can be implemented as a multithreaded algorithm, the filter will provide an implementation of ThreadedGenerateData(). More...
virtual void	PrepareOutputs () override
	This method is intentionally left blank. More...
virtual void	AllocateOutputs ()
	The GenerateData method normally allocates the buffers for all of the outputs of a filter. More...
virtual void	BeforeThreadedGenerateData ()
	If an imaging filter needs to perform processing after the buffer has been allocated but before threads are spawned, the filter can can provide an implementation for BeforeThreadedGenerateData(). More...
virtual void	AfterThreadedGenerateData ()
	If an imaging filter needs to perform processing after all processing threads have completed, the filter can can provide an implementation for AfterThreadedGenerateData(). More...
virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion)
	Split the output's RequestedRegion into "num" pieces, returning region "i" as "splitRegion". More...
Protected Member Functions inherited from mitk::BaseDataSource
	BaseDataSource ()
virtual	~BaseDataSource ()

Protected Attributes
TransformContainerType	m_InternalTransforms
mitk::Image::Pointer	m_ResamplingReferenceImage
mitk::Image::Pointer	m_DiffusionReferenceImage
InterpolatorLevel	m_InterpolationLevel
std::vector< MatrixType >	m_RotationMatrices
std::string	m_OutputPrefix
mitk::Image::Pointer	m_OutputCache

Additional Inherited Members
Static Public Member Functions inherited from mitk::ImageToImageFilter
static const char *	GetStaticNameOfClass ()
static Pointer	New ()
Static Public Member Functions inherited from mitk::ImageSource
static const char *	GetStaticNameOfClass ()
static Pointer	New ()
	Method for creation through the object factory. More...
Static Public Member Functions inherited from mitk::BaseDataSource
static const char *	GetStaticNameOfClass ()
Static Protected Member Functions inherited from mitk::ImageSource
static ITK_THREAD_RETURN_TYPE	ThreaderCallback (void *arg)
	Static function used as a "callback" by the MultiThreader. More...
Static Protected Member Functions inherited from mitk::BaseDataSource
static Pointer	New ()

Detailed Description

template<typename TTransformType>
class mitk::DiffusionImageTransformedCreationFilter< TTransformType >

DiffusionImageTransformedCreationFilter extends its superclass ( DiffusionImageCreationFilter ) by providing the possibility to specify a list of transforms to be applied to the separate volumes before.

Definition at line 36 of file mitkDiffusionImageTransformedCreationFilter.h.

Member Typedef Documentation

template<typename TTransformType >

typedef DiffusionImageCorrectionFilter::TransformMatrixType mitk::DiffusionImageTransformedCreationFilter< TTransformType >::MatrixType

protected

Definition at line 102 of file mitkDiffusionImageTransformedCreationFilter.h.

template<typename TTransformType >

typedef std::vector< typename TTransformType::Pointer > mitk::DiffusionImageTransformedCreationFilter< TTransformType >::TransformContainerType

Definition at line 54 of file mitkDiffusionImageTransformedCreationFilter.h.

template<typename TTransformType >

typedef std::vector< typename TTransformType::ParametersType > mitk::DiffusionImageTransformedCreationFilter< TTransformType >::TransformParametersContainerType

Definition at line 55 of file mitkDiffusionImageTransformedCreationFilter.h.

Member Enumeration Documentation

template<typename TTransformType >

enum mitk::DiffusionImageTransformedCreationFilter::InterpolatorLevel

Enumerator
NearestNeighbor
Trilinear
BSpline_Bicubic
WindowedSinc

Definition at line 46 of file mitkDiffusionImageTransformedCreationFilter.h.

Constructor & Destructor Documentation

template<typename TTransformType >

mitk::DiffusionImageTransformedCreationFilter< TTransformType >::DiffusionImageTransformedCreationFilter ( )

protected

Definition at line 109 of file mitkDiffusionImageTransformedCreationFilter.cxx.

template<typename TTransformType >

mitk::DiffusionImageTransformedCreationFilter< TTransformType >::~DiffusionImageTransformedCreationFilter ( )

protected

Definition at line 116 of file mitkDiffusionImageTransformedCreationFilter.cxx.

Member Function Documentation

template<typename TTransformType >

void mitk::DiffusionImageTransformedCreationFilter< TTransformType >::GenerateData ( )

overridevirtual

A version of GenerateData() specific for image processing filters.

This implementation will split the processing across multiple threads. The buffer is allocated by this method. Then the BeforeThreadedGenerateData() method is called (if provided). Then, a series of threads are spawned each calling ThreadedGenerateData(). After all the threads have completed processing, the AfterThreadedGenerateData() method is called (if provided). If an image processing filter cannot be threaded, the filter should provide an implementation of GenerateData(). That implementation is responsible for allocating the output buffer. If a filter an be threaded, it should NOT provide a GenerateData() method but should provide a ThreadedGenerateData() instead.

See also

ThreadedGenerateData()

Reimplemented from mitk::ImageSource.

Definition at line 148 of file mitkDiffusionImageTransformedCreationFilter.cxx.

References mitk::DiffusionPropertyHelper::BVALUEMAPPROPERTYNAME, mitk::CastToItkImage(), mitk::BValueMapProperty::CreateBValueMap(), mitk::DiffusionPropertyHelper::GetGradientContainer(), mitk::DiffusionPropertyHelper::GetMeasurementFrame(), mitk::DiffusionPropertyHelper::GetReferenceBValue(), mitk::DiffusionPropertyHelper::GRADIENTCONTAINERPROPERTYNAME, mitk::DiffusionPropertyHelper::InitializeImage(), mitk::DiffusionPropertyHelper::MEASUREMENTFRAMEPROPERTYNAME, mitkThrow, mitk::FloatProperty::New(), mitk::ImageToImageFilter::New(), mitk::ImageTimeSelector::New(), mitk::ImageSource::New(), mitk::New(), mitk::Image::New(), and mitk::DiffusionPropertyHelper::REFERENCEBVALUEPROPERTYNAME.

template<typename TTransformType >

void mitk::DiffusionImageTransformedCreationFilter< TTransformType >::GenerateOutputInformation ( void  )

overridevirtual

Definition at line 140 of file mitkDiffusionImageTransformedCreationFilter.cxx.

References MITK_INFO.

template<typename TTransformType >

mitk::DiffusionImageHeaderDescriptor mitk::DiffusionImageTransformedCreationFilter< TTransformType >::GetTransformedHeaderInformation ( )

protected

Definition at line 124 of file mitkDiffusionImageTransformedCreationFilter.cxx.

References mitk::DiffusionPropertyHelper::GetBValueMap(), mitk::DiffusionPropertyHelper::GetGradientContainer(), mitk::DiffusionPropertyHelper::GetMeasurementFrame(), mitk::DiffusionPropertyHelper::GetReferenceBValue(), mitk::DiffusionImageHeaderDescriptor::m_BValue, mitk::DiffusionImageHeaderDescriptor::m_BValueMapType, mitk::DiffusionImageHeaderDescriptor::m_GradientDirections, and mitk::DiffusionImageHeaderDescriptor::m_MeasurementFrame.

template<typename TTransformType >

mitk::DiffusionImageTransformedCreationFilter< TTransformType >::mitkClassMacro	(	DiffusionImageTransformedCreationFilter< TTransformType >	,
		ImageToImageFilter
	)

class macros

template<typename TTransformType >

void mitk::DiffusionImageTransformedCreationFilter< TTransformType >::SetInterpolationLevel ( InterpolatorLevel  lvl )

inline

Set interpolation type for resampling

Definition at line 64 of file mitkDiffusionImageTransformedCreationFilter.h.

template<typename TTransformType >

void mitk::DiffusionImageTransformedCreationFilter< TTransformType >::SetOutputPrefix ( std::string  prefix )

inline

Definition at line 81 of file mitkDiffusionImageTransformedCreationFilter.h.

template<typename TTransformType >

void mitk::DiffusionImageTransformedCreationFilter< TTransformType >::SetReferenceDiffusionImage ( mitk::Image::Pointer  dwimage )

inline

Definition at line 76 of file mitkDiffusionImageTransformedCreationFilter.h.

template<typename TTransformType >

void mitk::DiffusionImageTransformedCreationFilter< TTransformType >::SetResamplingReferenceImage ( mitk::Image::Pointer  image )

inline

Definition at line 71 of file mitkDiffusionImageTransformedCreationFilter.h.

template<typename TTransformType >

void mitk::DiffusionImageTransformedCreationFilter< TTransformType >::SetTransformParameters

(

const TransformParametersContainerType &

params

)

Set a container of transform parameters to be used to create transforms for transforming the input

Definition at line 217 of file mitkDiffusionImageTransformedCreationFilter.cxx.

References MITK_ERROR, and mitk::New().

template<typename TTransformType >

void mitk::DiffusionImageTransformedCreationFilter< TTransformType >::SetTransforms

(

const TransformContainerType &

transforms

)

Set a transform container to be used, one transform per volume

Definition at line 243 of file mitkDiffusionImageTransformedCreationFilter.cxx.

References MITK_ERROR.

Member Data Documentation

template<typename TTransformType >

mitk::Image::Pointer mitk::DiffusionImageTransformedCreationFilter< TTransformType >::m_DiffusionReferenceImage

protected

Definition at line 98 of file mitkDiffusionImageTransformedCreationFilter.h.

template<typename TTransformType >

TransformContainerType mitk::DiffusionImageTransformedCreationFilter< TTransformType >::m_InternalTransforms

protected

Definition at line 94 of file mitkDiffusionImageTransformedCreationFilter.h.

template<typename TTransformType >

InterpolatorLevel mitk::DiffusionImageTransformedCreationFilter< TTransformType >::m_InterpolationLevel

protected

Definition at line 100 of file mitkDiffusionImageTransformedCreationFilter.h.

template<typename TTransformType >

mitk::Image::Pointer mitk::DiffusionImageTransformedCreationFilter< TTransformType >::m_OutputCache

protected

Definition at line 107 of file mitkDiffusionImageTransformedCreationFilter.h.

template<typename TTransformType >

std::string mitk::DiffusionImageTransformedCreationFilter< TTransformType >::m_OutputPrefix

protected

Definition at line 105 of file mitkDiffusionImageTransformedCreationFilter.h.

template<typename TTransformType >

mitk::Image::Pointer mitk::DiffusionImageTransformedCreationFilter< TTransformType >::m_ResamplingReferenceImage

protected

Definition at line 96 of file mitkDiffusionImageTransformedCreationFilter.h.

template<typename TTransformType >

std::vector< MatrixType > mitk::DiffusionImageTransformedCreationFilter< TTransformType >::m_RotationMatrices

protected

Definition at line 103 of file mitkDiffusionImageTransformedCreationFilter.h.

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The documentation for this class was generated from the following files:

• mitkDiffusionImageTransformedCreationFilter.h
• mitkDiffusionImageTransformedCreationFilter.cxx