mitk::ConnectomicsStatisticsCalculator Class Reference

A class giving functions for calculating a variety of network indices. More...

#include <mitkConnectomicsStatisticsCalculator.h>

Inheritance diagram for mitk::ConnectomicsStatisticsCalculator:

Collaboration diagram for mitk::ConnectomicsStatisticsCalculator:

Public Types
typedef mitk::ConnectomicsNetwork::NetworkType	NetworkType
typedef mitk::ConnectomicsNetwork::VertexDescriptorType	VertexDescriptorType
typedef mitk::ConnectomicsNetwork::EdgeDescriptorType	EdgeDescriptorType
typedef boost::graph_traits< NetworkType >::vertex_iterator	VertexIteratorType
typedef boost::graph_traits< NetworkType >::edge_iterator	EdgeIteratorType
typedef boost::graph_traits< NetworkType >::adjacency_iterator	AdjacencyIteratorType
typedef std::map< EdgeDescriptorType, int >	EdgeIndexStdMapType
typedef boost::associative_property_map< EdgeIndexStdMapType >	EdgeIndexMapType
typedef boost::iterator_property_map< std::vector< double >::iterator, EdgeIndexMapType >	EdgeIteratorPropertyMapType
typedef boost::property_map< NetworkType, boost::vertex_index_t >::type	VertexIndexMapType
typedef boost::iterator_property_map< std::vector< double >::iterator, VertexIndexMapType >	VertexIteratorPropertyMapType

Public Member Functions
	mitkClassMacroItkParent (ConnectomicsStatisticsCalculator, itk::Object)
Pointer	Clone () const
virtual void	SetNetwork (mitk::ConnectomicsNetwork *_arg)
virtual unsigned int	GetNumberOfVertices ()
virtual unsigned int	GetNumberOfEdges ()
virtual double	GetAverageDegree ()
virtual double	GetConnectionDensity ()
virtual unsigned int	GetNumberOfConnectedComponents ()
virtual double	GetAverageComponentSize ()
virtual std::vector< int >	GetComponents ()
virtual unsigned int	GetLargestComponentSize ()
virtual double	GetRatioOfNodesInLargestComponent ()
virtual double	GetHopPlotExponent ()
virtual double	GetEffectiveHopDiameter ()
virtual std::vector< double >	GetVectorOfClusteringCoefficientsC ()
virtual std::vector< double >	GetVectorOfClusteringCoefficientsD ()
virtual std::vector< double >	GetVectorOfClusteringCoefficientsE ()
virtual double	GetAverageClusteringCoefficientsC ()
virtual double	GetAverageClusteringCoefficientsD ()
virtual double	GetAverageClusteringCoefficientsE ()
virtual std::vector< double >	GetVectorOfVertexBetweennessCentralities ()
virtual VertexIteratorPropertyMapType	GetPropertyMapOfVertexBetweennessCentralities ()
virtual double	GetAverageVertexBetweennessCentrality ()
virtual std::vector< double >	GetVectorOfEdgeBetweennessCentralities ()
virtual EdgeIteratorPropertyMapType	GetPropertyMapOfEdgeBetweennessCentralities ()
virtual double	GetAverageEdgeBetweennessCentrality ()
virtual unsigned int	GetNumberOfIsolatedPoints ()
virtual double	GetRatioOfIsolatedPoints ()
virtual unsigned int	GetNumberOfEndPoints ()
virtual double	GetRatioOfEndPoints ()
virtual std::vector< unsigned int >	GetVectorOfEccentrities ()
virtual std::vector< unsigned int >	GetVectorOfEccentrities90 ()
virtual std::vector< double >	GetVectorOfAveragePathLengths ()
virtual unsigned int	GetDiameter ()
virtual unsigned int	GetDiameter90 ()
virtual unsigned int	GetRadius ()
virtual unsigned int	GetRadius90 ()
virtual double	GetAverageEccentricity ()
virtual double	GetAverageEccentricity90 ()
virtual double	GetAveragePathLength ()
virtual unsigned int	GetNumberOfCentralPoints ()
virtual double	GetRatioOfCentralPoints ()
virtual std::vector< double >	GetVectorOfSortedEigenValues ()
virtual double	GetSpectralRadius ()
virtual double	GetSecondLargestEigenValue ()
virtual double	GetAdjacencyTrace ()
virtual double	GetAdjacencyEnergy ()
virtual std::vector< double >	GetVectorOfSortedLaplacianEigenValues ()
virtual double	GetLaplacianTrace ()
virtual double	GetLaplacianEnergy ()
virtual double	GetLaplacianSpectralGap ()
virtual std::vector< double >	GetVectorOfSortedNormalizedLaplacianEigenValues ()
virtual double	GetNormalizedLaplacianTrace ()
virtual double	GetNormalizedLaplacianEnergy ()
virtual unsigned int	GetNormalizedLaplacianNumberOf2s ()
virtual unsigned int	GetNormalizedLaplacianNumberOf1s ()
virtual unsigned int	GetNormalizedLaplacianNumberOf0s ()
virtual double	GetNormalizedLaplacianLowerSlope ()
virtual double	GetNormalizedLaplacianUpperSlope ()
virtual double	GetSmallWorldness ()
void	Update ()

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	ConnectomicsStatisticsCalculator ()
	~ConnectomicsStatisticsCalculator ()
void	CalculateNumberOfVertices ()
void	CalculateNumberOfEdges ()
void	CalculateAverageDegree ()
void	CalculateConnectionDensity ()
void	CalculateNumberOfConnectedComponents ()
void	CalculateAverageComponentSize ()
void	CalculateLargestComponentSize ()
void	CalculateRatioOfNodesInLargestComponent ()
void	CalculateHopPlotValues ()
void	CalculateClusteringCoefficients ()
	Calculate the different clustering coefficients. More...
void	CalculateBetweennessCentrality ()
void	CalculateIsolatedAndEndPoints ()
void	CalculateShortestPathMetrics ()
void	CalculateSpectralMetrics ()
void	CalculateLaplacianMetrics ()
void	CalculateNormalizedLaplacianMetrics ()
void	CalculateSmallWorldness ()
	Calculate the small worldness of the network. More...

Protected Attributes
mitk::ConnectomicsNetwork::Pointer	m_Network
unsigned int	m_NumberOfVertices
unsigned int	m_NumberOfEdges
double	m_AverageDegree
double	m_ConnectionDensity
unsigned int	m_NumberOfConnectedComponents
double	m_AverageComponentSize
std::vector< int >	m_Components
unsigned int	m_LargestComponentSize
double	m_RatioOfNodesInLargestComponent
double	m_HopPlotExponent
double	m_EffectiveHopDiameter
std::vector< double >	m_VectorOfClusteringCoefficientsC
std::vector< double >	m_VectorOfClusteringCoefficientsD
std::vector< double >	m_VectorOfClusteringCoefficientsE
double	m_AverageClusteringCoefficientsC
double	m_AverageClusteringCoefficientsD
double	m_AverageClusteringCoefficientsE
std::vector< double >	m_VectorOfVertexBetweennessCentralities
VertexIteratorPropertyMapType	m_PropertyMapOfVertexBetweennessCentralities
double	m_AverageVertexBetweennessCentrality
std::vector< double >	m_VectorOfEdgeBetweennessCentralities
EdgeIteratorPropertyMapType	m_PropertyMapOfEdgeBetweennessCentralities
double	m_AverageEdgeBetweennessCentrality
unsigned int	m_NumberOfIsolatedPoints
double	m_RatioOfIsolatedPoints
unsigned int	m_NumberOfEndPoints
double	m_RatioOfEndPoints
std::vector< unsigned int >	m_VectorOfEccentrities
std::vector< unsigned int >	m_VectorOfEccentrities90
std::vector< double >	m_VectorOfAveragePathLengths
unsigned int	m_Diameter
unsigned int	m_Diameter90
unsigned int	m_Radius
unsigned int	m_Radius90
double	m_AverageEccentricity
double	m_AverageEccentricity90
double	m_AveragePathLength
unsigned int	m_NumberOfCentralPoints
double	m_RatioOfCentralPoints
std::vector< double >	m_VectorOfSortedEigenValues
double	m_SpectralRadius
double	m_SecondLargestEigenValue
double	m_AdjacencyTrace
double	m_AdjacencyEnergy
std::vector< double >	m_VectorOfSortedLaplacianEigenValues
double	m_LaplacianTrace
double	m_LaplacianEnergy
double	m_LaplacianSpectralGap
std::vector< double >	m_VectorOfSortedNormalizedLaplacianEigenValues
double	m_NormalizedLaplacianTrace
double	m_NormalizedLaplacianEnergy
unsigned int	m_NormalizedLaplacianNumberOf2s
unsigned int	m_NormalizedLaplacianNumberOf1s
unsigned int	m_NormalizedLaplacianNumberOf0s
double	m_NormalizedLaplacianLowerSlope
double	m_NormalizedLaplacianUpperSlope
double	m_SmallWorldness

Detailed Description

A class giving functions for calculating a variety of network indices.

Definition at line 34 of file mitkConnectomicsStatisticsCalculator.h.

Member Typedef Documentation

typedef boost::graph_traits<NetworkType>::adjacency_iterator mitk::ConnectomicsStatisticsCalculator::AdjacencyIteratorType

Definition at line 51 of file mitkConnectomicsStatisticsCalculator.h.

typedef mitk::ConnectomicsNetwork::EdgeDescriptorType mitk::ConnectomicsStatisticsCalculator::EdgeDescriptorType

Definition at line 48 of file mitkConnectomicsStatisticsCalculator.h.

typedef boost::associative_property_map< EdgeIndexStdMapType > mitk::ConnectomicsStatisticsCalculator::EdgeIndexMapType

Definition at line 53 of file mitkConnectomicsStatisticsCalculator.h.

typedef std::map<EdgeDescriptorType, int> mitk::ConnectomicsStatisticsCalculator::EdgeIndexStdMapType

Definition at line 52 of file mitkConnectomicsStatisticsCalculator.h.

typedef boost::iterator_property_map< std::vector< double >::iterator, EdgeIndexMapType > mitk::ConnectomicsStatisticsCalculator::EdgeIteratorPropertyMapType

Definition at line 54 of file mitkConnectomicsStatisticsCalculator.h.

typedef boost::graph_traits<NetworkType>::edge_iterator mitk::ConnectomicsStatisticsCalculator::EdgeIteratorType

Definition at line 50 of file mitkConnectomicsStatisticsCalculator.h.

typedef mitk::ConnectomicsNetwork::NetworkType mitk::ConnectomicsStatisticsCalculator::NetworkType

Definition at line 46 of file mitkConnectomicsStatisticsCalculator.h.

typedef mitk::ConnectomicsNetwork::VertexDescriptorType mitk::ConnectomicsStatisticsCalculator::VertexDescriptorType

Definition at line 47 of file mitkConnectomicsStatisticsCalculator.h.

typedef boost::property_map< NetworkType, boost::vertex_index_t>::type mitk::ConnectomicsStatisticsCalculator::VertexIndexMapType

Definition at line 55 of file mitkConnectomicsStatisticsCalculator.h.

typedef boost::iterator_property_map< std::vector< double >::iterator, VertexIndexMapType > mitk::ConnectomicsStatisticsCalculator::VertexIteratorPropertyMapType

Definition at line 56 of file mitkConnectomicsStatisticsCalculator.h.

typedef boost::graph_traits<NetworkType>::vertex_iterator mitk::ConnectomicsStatisticsCalculator::VertexIteratorType

Definition at line 49 of file mitkConnectomicsStatisticsCalculator.h.

Constructor & Destructor Documentation

mitk::ConnectomicsStatisticsCalculator::ConnectomicsStatisticsCalculator ( )

protected

Definition at line 56 of file mitkConnectomicsStatisticsCalculator.cpp.

mitk::ConnectomicsStatisticsCalculator::~ConnectomicsStatisticsCalculator ( )

protected

Definition at line 117 of file mitkConnectomicsStatisticsCalculator.cpp.

Member Function Documentation

void mitk::ConnectomicsStatisticsCalculator::CalculateAverageComponentSize ( )

protected

Definition at line 170 of file mitkConnectomicsStatisticsCalculator.cpp.

void mitk::ConnectomicsStatisticsCalculator::CalculateAverageDegree ( )

protected

Definition at line 152 of file mitkConnectomicsStatisticsCalculator.cpp.

void mitk::ConnectomicsStatisticsCalculator::CalculateBetweennessCentrality ( )

protected

Definition at line 342 of file mitkConnectomicsStatisticsCalculator.cpp.

void mitk::ConnectomicsStatisticsCalculator::CalculateClusteringCoefficients ( )

protected

Calculate the different clustering coefficients.

The clustering coefficient (cc) measures how strong the tendency to form cliques is in the network. Groups of nodes, that are highly interconnected.

CC C - Percentage of connections between nodes connected with the given node CC D - Same as C, but including the connections with the given node CC E - Same as C, but not counting isolated nodes when averaging

Definition at line 262 of file mitkConnectomicsStatisticsCalculator.cpp.

void mitk::ConnectomicsStatisticsCalculator::CalculateConnectionDensity ( )

protected

Definition at line 157 of file mitkConnectomicsStatisticsCalculator.cpp.

void mitk::ConnectomicsStatisticsCalculator::CalculateHopPlotValues ( )

protected

Definition at line 199 of file mitkConnectomicsStatisticsCalculator.cpp.

void mitk::ConnectomicsStatisticsCalculator::CalculateIsolatedAndEndPoints ( )

protected

Definition at line 383 of file mitkConnectomicsStatisticsCalculator.cpp.

void mitk::ConnectomicsStatisticsCalculator::CalculateLaplacianMetrics ( )

protected

Definition at line 590 of file mitkConnectomicsStatisticsCalculator.cpp.

References mitk::eps, and mitk::ConnectomicsNetworkConverter::New().

void mitk::ConnectomicsStatisticsCalculator::CalculateLargestComponentSize ( )

protected

Definition at line 175 of file mitkConnectomicsStatisticsCalculator.cpp.

void mitk::ConnectomicsStatisticsCalculator::CalculateNormalizedLaplacianMetrics ( )

protected

Definition at line 627 of file mitkConnectomicsStatisticsCalculator.cpp.

References mitk::eps.

void mitk::ConnectomicsStatisticsCalculator::CalculateNumberOfConnectedComponents ( )

protected

Definition at line 164 of file mitkConnectomicsStatisticsCalculator.cpp.

void mitk::ConnectomicsStatisticsCalculator::CalculateNumberOfEdges ( )

protected

Definition at line 147 of file mitkConnectomicsStatisticsCalculator.cpp.

void mitk::ConnectomicsStatisticsCalculator::CalculateNumberOfVertices ( )

protected

Definition at line 142 of file mitkConnectomicsStatisticsCalculator.cpp.

void mitk::ConnectomicsStatisticsCalculator::CalculateRatioOfNodesInLargestComponent ( )

protected

Definition at line 194 of file mitkConnectomicsStatisticsCalculator.cpp.

void mitk::ConnectomicsStatisticsCalculator::CalculateShortestPathMetrics ( )

protected

Calculates Shortest Path Related metrics of the graph. The function runs a BFS from each node to find out the shortest distances to other nodes in the graph. The maximum of this distance is called the eccentricity of that node. The maximum eccentricity in the graph is called diameter and the minimum eccentricity is called the radius of the graph. Central points are those nodes having eccentricity equals to radius.

Definition at line 416 of file mitkConnectomicsStatisticsCalculator.cpp.

References max().

void mitk::ConnectomicsStatisticsCalculator::CalculateSmallWorldness ( )

protected

Calculate the small worldness of the network.

This will compare the clustering coefficient and mean path length of the network to an Erdos-Reny network of the same number of nodes and edges.

Definition at line 727 of file mitkConnectomicsStatisticsCalculator.cpp.

void mitk::ConnectomicsStatisticsCalculator::CalculateSpectralMetrics ( )

protected

Definition at line 564 of file mitkConnectomicsStatisticsCalculator.cpp.

References mitk::ConnectomicsNetworkConverter::New().

Pointer mitk::ConnectomicsStatisticsCalculator::Clone

(

)

const

virtual double mitk::ConnectomicsStatisticsCalculator::GetAdjacencyEnergy ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetAdjacencyTrace ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetAverageClusteringCoefficientsC ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetAverageClusteringCoefficientsD ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetAverageClusteringCoefficientsE ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetAverageComponentSize ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetAverageDegree ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetAverageEccentricity ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetAverageEccentricity90 ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetAverageEdgeBetweennessCentrality ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetAveragePathLength ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetAverageVertexBetweennessCentrality ( )

virtual

virtual std::vector< int > mitk::ConnectomicsStatisticsCalculator::GetComponents ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetConnectionDensity ( )

virtual

virtual unsigned int mitk::ConnectomicsStatisticsCalculator::GetDiameter ( )

virtual

virtual unsigned int mitk::ConnectomicsStatisticsCalculator::GetDiameter90 ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetEffectiveHopDiameter ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetHopPlotExponent ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetLaplacianEnergy ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetLaplacianSpectralGap ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetLaplacianTrace ( )

virtual

virtual unsigned int mitk::ConnectomicsStatisticsCalculator::GetLargestComponentSize ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetNormalizedLaplacianEnergy ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetNormalizedLaplacianLowerSlope ( )

virtual

virtual unsigned int mitk::ConnectomicsStatisticsCalculator::GetNormalizedLaplacianNumberOf0s ( )

virtual

virtual unsigned int mitk::ConnectomicsStatisticsCalculator::GetNormalizedLaplacianNumberOf1s ( )

virtual

virtual unsigned int mitk::ConnectomicsStatisticsCalculator::GetNormalizedLaplacianNumberOf2s ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetNormalizedLaplacianTrace ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetNormalizedLaplacianUpperSlope ( )

virtual

virtual unsigned int mitk::ConnectomicsStatisticsCalculator::GetNumberOfCentralPoints ( )

virtual

virtual unsigned int mitk::ConnectomicsStatisticsCalculator::GetNumberOfConnectedComponents ( )

virtual

virtual unsigned int mitk::ConnectomicsStatisticsCalculator::GetNumberOfEdges ( )

virtual

virtual unsigned int mitk::ConnectomicsStatisticsCalculator::GetNumberOfEndPoints ( )

virtual

virtual unsigned int mitk::ConnectomicsStatisticsCalculator::GetNumberOfIsolatedPoints ( )

virtual

virtual unsigned int mitk::ConnectomicsStatisticsCalculator::GetNumberOfVertices ( )

virtual

virtual EdgeIteratorPropertyMapType mitk::ConnectomicsStatisticsCalculator::GetPropertyMapOfEdgeBetweennessCentralities ( )

virtual

virtual VertexIteratorPropertyMapType mitk::ConnectomicsStatisticsCalculator::GetPropertyMapOfVertexBetweennessCentralities ( )

virtual

virtual unsigned int mitk::ConnectomicsStatisticsCalculator::GetRadius ( )

virtual

virtual unsigned int mitk::ConnectomicsStatisticsCalculator::GetRadius90 ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetRatioOfCentralPoints ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetRatioOfEndPoints ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetRatioOfIsolatedPoints ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetRatioOfNodesInLargestComponent ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetSecondLargestEigenValue ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetSmallWorldness ( )

virtual

virtual double mitk::ConnectomicsStatisticsCalculator::GetSpectralRadius ( )

virtual

virtual std::vector< double > mitk::ConnectomicsStatisticsCalculator::GetVectorOfAveragePathLengths ( )

virtual

virtual std::vector< double > mitk::ConnectomicsStatisticsCalculator::GetVectorOfClusteringCoefficientsC ( )

virtual

virtual std::vector< double > mitk::ConnectomicsStatisticsCalculator::GetVectorOfClusteringCoefficientsD ( )

virtual

virtual std::vector< double > mitk::ConnectomicsStatisticsCalculator::GetVectorOfClusteringCoefficientsE ( )

virtual

virtual std::vector< unsigned int > mitk::ConnectomicsStatisticsCalculator::GetVectorOfEccentrities ( )

virtual

virtual std::vector< unsigned int > mitk::ConnectomicsStatisticsCalculator::GetVectorOfEccentrities90 ( )

virtual

virtual std::vector< double > mitk::ConnectomicsStatisticsCalculator::GetVectorOfEdgeBetweennessCentralities ( )

virtual

virtual std::vector< double > mitk::ConnectomicsStatisticsCalculator::GetVectorOfSortedEigenValues ( )

virtual

virtual std::vector< double > mitk::ConnectomicsStatisticsCalculator::GetVectorOfSortedLaplacianEigenValues ( )

virtual

virtual std::vector< double > mitk::ConnectomicsStatisticsCalculator::GetVectorOfSortedNormalizedLaplacianEigenValues ( )

virtual

virtual std::vector< double > mitk::ConnectomicsStatisticsCalculator::GetVectorOfVertexBetweennessCentralities ( )

virtual

mitk::ConnectomicsStatisticsCalculator::mitkClassMacroItkParent	(	ConnectomicsStatisticsCalculator	,
		itk::Object
	)

Standard class typedefs. Method for creation through the object factory.

static Pointer mitk::ConnectomicsStatisticsCalculator::New ( )

static

Referenced by mitk::Equal(), main(), mitk::ConnectomicsNetworkThresholder::ThresholdBelowDensity(), and mitk::ConnectomicsNetworkThresholder::ThresholdByRandomRemoval().

virtual void mitk::ConnectomicsStatisticsCalculator::SetNetwork ( mitk::ConnectomicsNetwork *  _arg )

virtual

void mitk::ConnectomicsStatisticsCalculator::Update

(

)

Definition at line 121 of file mitkConnectomicsStatisticsCalculator.cpp.

Member Data Documentation

double mitk::ConnectomicsStatisticsCalculator::m_AdjacencyEnergy

protected

Definition at line 225 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_AdjacencyTrace

protected

Definition at line 224 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_AverageClusteringCoefficientsC

protected

Definition at line 196 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_AverageClusteringCoefficientsD

protected

Definition at line 197 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_AverageClusteringCoefficientsE

protected

Definition at line 198 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_AverageComponentSize

protected

Definition at line 187 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_AverageDegree

protected

Definition at line 184 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_AverageEccentricity

protected

Definition at line 216 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_AverageEccentricity90

protected

Definition at line 217 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_AverageEdgeBetweennessCentrality

protected

Definition at line 204 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_AveragePathLength

protected

Definition at line 218 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_AverageVertexBetweennessCentrality

protected

Definition at line 201 of file mitkConnectomicsStatisticsCalculator.h.

std::vector< int > mitk::ConnectomicsStatisticsCalculator::m_Components

protected

Definition at line 188 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_ConnectionDensity

protected

Definition at line 185 of file mitkConnectomicsStatisticsCalculator.h.

unsigned int mitk::ConnectomicsStatisticsCalculator::m_Diameter

protected

Definition at line 212 of file mitkConnectomicsStatisticsCalculator.h.

unsigned int mitk::ConnectomicsStatisticsCalculator::m_Diameter90

protected

Definition at line 213 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_EffectiveHopDiameter

protected

Definition at line 192 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_HopPlotExponent

protected

Definition at line 191 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_LaplacianEnergy

protected

Definition at line 228 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_LaplacianSpectralGap

protected

Definition at line 229 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_LaplacianTrace

protected

Definition at line 227 of file mitkConnectomicsStatisticsCalculator.h.

unsigned int mitk::ConnectomicsStatisticsCalculator::m_LargestComponentSize

protected

Definition at line 189 of file mitkConnectomicsStatisticsCalculator.h.

mitk::ConnectomicsNetwork::Pointer mitk::ConnectomicsStatisticsCalculator::m_Network

protected

Definition at line 179 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_NormalizedLaplacianEnergy

protected

Definition at line 232 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_NormalizedLaplacianLowerSlope

protected

Definition at line 236 of file mitkConnectomicsStatisticsCalculator.h.

unsigned int mitk::ConnectomicsStatisticsCalculator::m_NormalizedLaplacianNumberOf0s

protected

Definition at line 235 of file mitkConnectomicsStatisticsCalculator.h.

unsigned int mitk::ConnectomicsStatisticsCalculator::m_NormalizedLaplacianNumberOf1s

protected

Definition at line 234 of file mitkConnectomicsStatisticsCalculator.h.

unsigned int mitk::ConnectomicsStatisticsCalculator::m_NormalizedLaplacianNumberOf2s

protected

Definition at line 233 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_NormalizedLaplacianTrace

protected

Definition at line 231 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_NormalizedLaplacianUpperSlope

protected

Definition at line 237 of file mitkConnectomicsStatisticsCalculator.h.

unsigned int mitk::ConnectomicsStatisticsCalculator::m_NumberOfCentralPoints

protected

Definition at line 219 of file mitkConnectomicsStatisticsCalculator.h.

unsigned int mitk::ConnectomicsStatisticsCalculator::m_NumberOfConnectedComponents

protected

Definition at line 186 of file mitkConnectomicsStatisticsCalculator.h.

unsigned int mitk::ConnectomicsStatisticsCalculator::m_NumberOfEdges

protected

Definition at line 183 of file mitkConnectomicsStatisticsCalculator.h.

unsigned int mitk::ConnectomicsStatisticsCalculator::m_NumberOfEndPoints

protected

Definition at line 207 of file mitkConnectomicsStatisticsCalculator.h.

unsigned int mitk::ConnectomicsStatisticsCalculator::m_NumberOfIsolatedPoints

protected

Definition at line 205 of file mitkConnectomicsStatisticsCalculator.h.

unsigned int mitk::ConnectomicsStatisticsCalculator::m_NumberOfVertices

protected

Definition at line 182 of file mitkConnectomicsStatisticsCalculator.h.

EdgeIteratorPropertyMapType mitk::ConnectomicsStatisticsCalculator::m_PropertyMapOfEdgeBetweennessCentralities

protected

Definition at line 203 of file mitkConnectomicsStatisticsCalculator.h.

VertexIteratorPropertyMapType mitk::ConnectomicsStatisticsCalculator::m_PropertyMapOfVertexBetweennessCentralities

protected

Definition at line 200 of file mitkConnectomicsStatisticsCalculator.h.

unsigned int mitk::ConnectomicsStatisticsCalculator::m_Radius

protected

Definition at line 214 of file mitkConnectomicsStatisticsCalculator.h.

unsigned int mitk::ConnectomicsStatisticsCalculator::m_Radius90

protected

Definition at line 215 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_RatioOfCentralPoints

protected

Definition at line 220 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_RatioOfEndPoints

protected

Definition at line 208 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_RatioOfIsolatedPoints

protected

Definition at line 206 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_RatioOfNodesInLargestComponent

protected

Definition at line 190 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_SecondLargestEigenValue

protected

Definition at line 223 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_SmallWorldness

protected

Definition at line 238 of file mitkConnectomicsStatisticsCalculator.h.

double mitk::ConnectomicsStatisticsCalculator::m_SpectralRadius

protected

Definition at line 222 of file mitkConnectomicsStatisticsCalculator.h.

std::vector< double > mitk::ConnectomicsStatisticsCalculator::m_VectorOfAveragePathLengths

protected

Definition at line 211 of file mitkConnectomicsStatisticsCalculator.h.

std::vector< double > mitk::ConnectomicsStatisticsCalculator::m_VectorOfClusteringCoefficientsC

protected

Definition at line 193 of file mitkConnectomicsStatisticsCalculator.h.

std::vector< double > mitk::ConnectomicsStatisticsCalculator::m_VectorOfClusteringCoefficientsD

protected

Definition at line 194 of file mitkConnectomicsStatisticsCalculator.h.

std::vector< double > mitk::ConnectomicsStatisticsCalculator::m_VectorOfClusteringCoefficientsE

protected

Definition at line 195 of file mitkConnectomicsStatisticsCalculator.h.

std::vector< unsigned int > mitk::ConnectomicsStatisticsCalculator::m_VectorOfEccentrities

protected

Definition at line 209 of file mitkConnectomicsStatisticsCalculator.h.

std::vector< unsigned int > mitk::ConnectomicsStatisticsCalculator::m_VectorOfEccentrities90

protected

Definition at line 210 of file mitkConnectomicsStatisticsCalculator.h.

std::vector< double > mitk::ConnectomicsStatisticsCalculator::m_VectorOfEdgeBetweennessCentralities

protected

Definition at line 202 of file mitkConnectomicsStatisticsCalculator.h.

std::vector<double> mitk::ConnectomicsStatisticsCalculator::m_VectorOfSortedEigenValues

protected

Definition at line 221 of file mitkConnectomicsStatisticsCalculator.h.

std::vector<double> mitk::ConnectomicsStatisticsCalculator::m_VectorOfSortedLaplacianEigenValues

protected

Definition at line 226 of file mitkConnectomicsStatisticsCalculator.h.

std::vector<double> mitk::ConnectomicsStatisticsCalculator::m_VectorOfSortedNormalizedLaplacianEigenValues

protected

Definition at line 230 of file mitkConnectomicsStatisticsCalculator.h.

std::vector< double > mitk::ConnectomicsStatisticsCalculator::m_VectorOfVertexBetweennessCentralities

protected

Definition at line 199 of file mitkConnectomicsStatisticsCalculator.h.

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The documentation for this class was generated from the following files:

• mitkConnectomicsStatisticsCalculator.h
• mitkConnectomicsStatisticsCalculator.cpp