mitk::CLUtil Class Reference

#include <mitkCLUtil.h>

Public Types
enum	MorphologicalDimensions { Axial, Coronal, Sagital, All }
	The MorphologicalDimensions enum. More...

Static Public Member Functions
static void	CreateCheckerboardMask (mitk::Image::Pointer image, mitk::Image::Pointer &outimage)
	CreateCheckerBoardPredictionMask. More...
static void	InterpolateCheckerboardPrediction (mitk::Image::Pointer checkerboard_prediction, mitk::Image::Pointer &checkerboard_mask, mitk::Image::Pointer &outimage)
	InterpolateCreateCheckerboardPrediction. More...
static void	CountVoxel (mitk::Image::Pointer image, std::map< unsigned int, unsigned int > &map)
	CountVoxel. More...
static void	CountVoxel (mitk::Image::Pointer image, unsigned int label, unsigned int &count)
	CountVoxel. More...
static void	CountVoxel (mitk::Image::Pointer image, unsigned int &count)
	CountVoxel. More...
static void	SumVoxelForLabel (mitk::Image::Pointer image, const mitk::Image::Pointer &source, unsigned int label, double &val)
	SumVoxelForLabel. More...
static void	SqSumVoxelForLabel (mitk::Image::Pointer image, const mitk::Image::Pointer &source, unsigned int label, double &val)
	SqSumVoxelForLabel. More...
static void	LogicalAndImages (const Image::Pointer &image1, const Image::Pointer &image2, Image::Pointer &outimage)
	LogicalAndImages. More...
static void	GaussianFilter (mitk::Image::Pointer image, mitk::Image::Pointer &smoothed, double sigma)
	GaussianFilter. More...
template<typename TMatrixElementType >
static mitk::Image::Pointer	Transform (const Eigen::Matrix< TMatrixElementType, Eigen::Dynamic, Eigen::Dynamic > &matrix, const mitk::Image::Pointer &mask)
	transform More...
template<typename TMatrixElementType >
static Eigen::Matrix< TMatrixElementType, Eigen::Dynamic, Eigen::Dynamic >	Transform (const mitk::Image::Pointer &img, const mitk::Image::Pointer &mask)
	TransformImageToMatrix. More...
static void	DilateBinary (mitk::Image::Pointer &sourceImage, mitk::Image::Pointer &resultImage, int radius, MorphologicalDimensions d)
	DilateBinary. More...
static void	ErodeBinary (mitk::Image::Pointer &sourceImage, mitk::Image::Pointer &resultImage, int radius, MorphologicalDimensions d)
	ErodeBinary. More...
static void	ClosingBinary (mitk::Image::Pointer &sourceImage, mitk::Image::Pointer &resultImage, int radius, MorphologicalDimensions d)
	ClosingBinary. More...
static void	MergeLabels (mitk::Image::Pointer &img, const std::map< unsigned int, unsigned int > &map)
	MergeLabels. More...
static void	ConnectedComponentsImage (mitk::Image::Pointer &image, mitk::Image::Pointer &mask, mitk::Image::Pointer &outimage, unsigned int &num_components)
	ConnectedComponentsImage. More...
static void	GrabLabel (mitk::Image::Pointer &image, mitk::Image::Pointer &outimage, unsigned int label)
	GrabLabel. More...
static void	InsertLabel (mitk::Image::Pointer &image, mitk::Image::Pointer &maskImage, unsigned int label)
	itkInsertLabel More...
static void	ErodeGrayscale (mitk::Image::Pointer &image, unsigned int radius, mitk::CLUtil::MorphologicalDimensions d, mitk::Image::Pointer &outimage)
	ErodeGrayscale. More...
static void	DilateGrayscale (mitk::Image::Pointer &image, unsigned int radius, mitk::CLUtil::MorphologicalDimensions d, mitk::Image::Pointer &outimage)
	DilateGrayscale. More...
static void	FillHoleGrayscale (mitk::Image::Pointer &image, mitk::Image::Pointer &outimage)
	FillHoleGrayscale. More...
static void	ProbabilityMap (const mitk::Image::Pointer &sourceImage, double mean, double std_dev, mitk::Image::Pointer &resultImage)
	ProbabilityMap. More...
template<class TImageType >
static void	itkCountVoxel (TImageType *image, std::map< unsigned int, unsigned int > &map)
template<class TImageType >
static void	itkCountVoxel (TImageType *image, typename TImageType::PixelType label, unsigned int &count)
template<typename TImageType >
static void	itkCountVoxel (TImageType *mask, unsigned int &n_numSamples)
template<class TImageType1 , class TImageType2 >
static void	itkSampleLabel (TImageType1 *image, TImageType2 *output, double acceptrate, unsigned int label)
template<class TImageType >
static void	itkSampleLabel (TImageType *image, mitk::Image::Pointer &output, unsigned int n_samples_drawn)

Detailed Description

Definition at line 17 of file mitkCLUtil.h.

Member Enumeration Documentation

enum mitk::CLUtil::MorphologicalDimensions

The MorphologicalDimensions enum.

Enumerator
Axial
Coronal
Sagital
All

Definition at line 23 of file mitkCLUtil.h.

Member Function Documentation

void mitk::CLUtil::ClosingBinary ( mitk::Image::Pointer &  sourceImage, mitk::Image::Pointer &  resultImage, int  radius, MorphologicalDimensions  d  )

static

ClosingBinary.

Parameters

BinaryImage
BinaryImage
Size	of the StructuringElement
Dimension

Definition at line 118 of file mitkCLUtil.cpp.

References AccessFixedDimensionByItk_3.

void mitk::CLUtil::ConnectedComponentsImage ( mitk::Image::Pointer &  image, mitk::Image::Pointer &  mask, mitk::Image::Pointer &  outimage, unsigned int &  num_components  )

static

ConnectedComponentsImage.

Parameters

BinaryImage
BinaryImage
MultilabelImage
Number	of components found in the image

Definition at line 59 of file mitkCLUtil.cpp.

References AccessFixedDimensionByItk_3.

void mitk::CLUtil::CountVoxel ( mitk::Image::Pointer  image, std::map< unsigned int, unsigned int > &  map  )

static

CountVoxel.

Parameters

image
map

Definition at line 69 of file mitkCLUtil.cpp.

References AccessByItk_1, and itkCountVoxel().

Referenced by main(), ReadMitkProjectImageAndMask(), and Transform().

void mitk::CLUtil::CountVoxel ( mitk::Image::Pointer  image, unsigned int  label, unsigned int &  count  )

static

CountVoxel.

Parameters

image
label
count

Definition at line 74 of file mitkCLUtil.cpp.

References AccessByItk_2, and itkCountVoxel().

void mitk::CLUtil::CountVoxel ( mitk::Image::Pointer  image, unsigned int &  count  )

static

CountVoxel.

Parameters

image
count

Definition at line 79 of file mitkCLUtil.cpp.

References AccessByItk_1, and itkCountVoxel().

void mitk::CLUtil::CreateCheckerboardMask ( mitk::Image::Pointer  image, mitk::Image::Pointer &  outimage  )

static

CreateCheckerBoardPredictionMask.

Parameters

image
outimage

Definition at line 84 of file mitkCLUtil.cpp.

References AccessFixedDimensionByItk_1.

void mitk::CLUtil::DilateBinary ( mitk::Image::Pointer &  sourceImage, mitk::Image::Pointer &  resultImage, int  radius, MorphologicalDimensions  d  )

static

DilateBinary.

Parameters

BinaryImage
BinaryImage
Size	of the StructuringElement
Dimension

Definition at line 106 of file mitkCLUtil.cpp.

References AccessFixedDimensionByItk_3.

void mitk::CLUtil::DilateGrayscale ( mitk::Image::Pointer &  image, unsigned int  radius, mitk::CLUtil::MorphologicalDimensions  d, mitk::Image::Pointer &  outimage  )

static

DilateGrayscale.

Parameters

image
outimage
radius
d

Definition at line 39 of file mitkCLUtil.cpp.

References AccessFixedDimensionByItk_3.

Referenced by main().

void mitk::CLUtil::ErodeBinary ( mitk::Image::Pointer &  sourceImage, mitk::Image::Pointer &  resultImage, int  radius, MorphologicalDimensions  d  )

static

ErodeBinary.

Parameters

BinaryImage
BinaryImage
Size	of the StructuringElement
Dimension

Definition at line 112 of file mitkCLUtil.cpp.

References AccessFixedDimensionByItk_3.

void mitk::CLUtil::ErodeGrayscale ( mitk::Image::Pointer &  image, unsigned int  radius, mitk::CLUtil::MorphologicalDimensions  d, mitk::Image::Pointer &  outimage  )

static

ErodeGrayscale.

Parameters

image
outimage
radius
d

Definition at line 34 of file mitkCLUtil.cpp.

References AccessFixedDimensionByItk_3.

Referenced by main().

void mitk::CLUtil::FillHoleGrayscale ( mitk::Image::Pointer &  image, mitk::Image::Pointer &  outimage  )

static

FillHoleGrayscale.

Parameters

image
outimage

Definition at line 44 of file mitkCLUtil.cpp.

References AccessFixedDimensionByItk_1.

Referenced by main().

void mitk::CLUtil::GaussianFilter ( mitk::Image::Pointer  image, mitk::Image::Pointer &  smoothed, double  sigma  )

static

GaussianFilter.

Parameters

image
smoothed
sigma

Definition at line 100 of file mitkCLUtil.cpp.

References AccessFixedDimensionByItk_2.

Referenced by ProcessFeatureImages().

void mitk::CLUtil::GrabLabel ( mitk::Image::Pointer &  image, mitk::Image::Pointer &  outimage, unsigned int  label  )

static

GrabLabel.

Parameters

MultiLabelImage
outimage
label

Definition at line 54 of file mitkCLUtil.cpp.

References AccessFixedDimensionByItk_2.

void mitk::CLUtil::InsertLabel ( mitk::Image::Pointer &  image, mitk::Image::Pointer &  maskImage, unsigned int  label  )

static

itkInsertLabel

Parameters

image
maskImage
label

Definition at line 49 of file mitkCLUtil.cpp.

References AccessByItk_2.

void mitk::CLUtil::InterpolateCheckerboardPrediction ( mitk::Image::Pointer  checkerboard_prediction, mitk::Image::Pointer &  checkerboard_mask, mitk::Image::Pointer &  outimage  )

static

InterpolateCreateCheckerboardPrediction.

Parameters

image
outimage

Definition at line 95 of file mitkCLUtil.cpp.

References AccessFixedDimensionByItk_2.

template<class TImageType >

static void mitk::CLUtil::itkCountVoxel ( TImageType *  image, std::map< unsigned int, unsigned int > &  map  )

inlinestatic

Definition at line 271 of file mitkCLUtil.h.

Referenced by CountVoxel().

template<class TImageType >

static void mitk::CLUtil::itkCountVoxel ( TImageType *  image, typename TImageType::PixelType  label, unsigned int &  count  )

inlinestatic

Definition at line 284 of file mitkCLUtil.h.

template<typename TImageType >

static void mitk::CLUtil::itkCountVoxel ( TImageType *  mask, unsigned int &  n_numSamples  )

inlinestatic

Definition at line 295 of file mitkCLUtil.h.

template<class TImageType1 , class TImageType2 >

static void mitk::CLUtil::itkSampleLabel ( TImageType1 *  image, TImageType2 *  output, double  acceptrate, unsigned int  label  )

inlinestatic

Definition at line 307 of file mitkCLUtil.h.

Referenced by main().

template<class TImageType >

static void mitk::CLUtil::itkSampleLabel ( TImageType *  image, mitk::Image::Pointer &  output, unsigned int  n_samples_drawn  )

inlinestatic

Definition at line 326 of file mitkCLUtil.h.

References mitk::CastToMitkImage(), and mitk::New().

void mitk::CLUtil::LogicalAndImages ( const Image::Pointer &  image1, const Image::Pointer &  image2, Image::Pointer &  outimage  )

static

LogicalAndImages.

Parameters

image1
image2

Definition at line 89 of file mitkCLUtil.cpp.

References AccessFixedDimensionByItk_2.

void mitk::CLUtil::MergeLabels ( mitk::Image::Pointer &  img, const std::map< unsigned int, unsigned int > &  map  )

static

MergeLabels.

Parameters

MultilabelImage
map	merge instruction where each map entry defines a mapping instruction. Key <sourcelabel> - Value <targetlabel>

Definition at line 64 of file mitkCLUtil.cpp.

References AccessByItk_1.

Referenced by main(), and ReadMitkProjectImageAndMask().

void mitk::CLUtil::ProbabilityMap ( const mitk::Image::Pointer &  sourceImage, double  mean, double  std_dev, mitk::Image::Pointer &  resultImage  )

static

ProbabilityMap.

Parameters

sourceImage
mean
std_dev
resultImage

Definition at line 29 of file mitkCLUtil.cpp.

References AccessFixedDimensionByItk_3.

Referenced by main(), and ProcessFeatureImages().

static void mitk::CLUtil::SqSumVoxelForLabel ( mitk::Image::Pointer  image, const mitk::Image::Pointer &  source, unsigned int  label, double &  val  )

static

SqSumVoxelForLabel.

Parameters

image
source
label
val

static void mitk::CLUtil::SumVoxelForLabel ( mitk::Image::Pointer  image, const mitk::Image::Pointer &  source, unsigned int  label, double &  val  )

static

SumVoxelForLabel.

Parameters

image
source
label
val

template<typename TMatrixElementType >

static mitk::Image::Pointer mitk::CLUtil::Transform ( const Eigen::Matrix< TMatrixElementType, Eigen::Dynamic, Eigen::Dynamic > &  matrix, const mitk::Image::Pointer &  mask  )

inlinestatic

transform

Parameters

matrix
mask
outimage

Definition at line 105 of file mitkCLUtil.h.

References mitk::CastToItkImage(), CountVoxel(), mitk::GrabItkImageMemory(), MITK_ERROR, mitk::New(), and mitk::Image::New().

template<typename TMatrixElementType >

static Eigen::Matrix<TMatrixElementType, Eigen::Dynamic, Eigen::Dynamic> mitk::CLUtil::Transform ( const mitk::Image::Pointer &  img, const mitk::Image::Pointer &  mask  )

inlinestatic

TransformImageToMatrix.

Parameters

in_img
mask
out_matrix

Definition at line 149 of file mitkCLUtil.h.

References mitk::CastToItkImage(), and CountVoxel().

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The documentation for this class was generated from the following files:

• mitkCLUtil.h
• mitkCLUtil.cpp