Crops or masks an Boundingbox defined by GeometryData out of an mitk Image. More...

#include <mitkBoundingShapeCropper.h>

Inheritance diagram for mitk::BoundingShapeCropper:

Collaboration diagram for mitk::BoundingShapeCropper:

Public Member Functions
	mitkClassMacro (BoundingShapeCropper, ImageToImageFilter)

Pointer	Clone () const

void	SetGeometry (const mitk::GeometryData *geometry)
	Set geometry of the bounding object. More...

virtual void	SetOutsideValue (ScalarType _arg)
	Get geometry of the bounding object. More...

virtual ScalarType	GetOutsideValue ()

virtual void	SetUseWholeInputRegion (bool _arg)
	Sets and Gets whether a masking or cropping needs to be performed. More...

virtual bool	GetUseWholeInputRegion ()

virtual void	SetCurrentTimeStep (ScalarType _arg)
	Sets and Gets the current timestep for images with 4 dimensons. More...

virtual ScalarType	GetCurrentTimeStep ()

virtual void	SetUseCropTimeStepOnly (bool _arg)
	Sets and Gets whether only one timestep is cropped / masked. More...

virtual bool	GetUseCropTimeStepOnly ()

Public Member Functions inherited from mitk::ImageToImageFilter
virtual std::vector< std::string >	GetClassHierarchy () const override

virtual const char *	GetClassName () const

Pointer	Clone () const

virtual void	SetInput (const InputImageType *image)

virtual void	SetInput (unsigned int, const InputImageType *image)

InputImageType *	GetInput (void)

InputImageType *	GetInput (unsigned int idx)

const InputImageType *	GetInput (void) const

const InputImageType *	GetInput (unsigned int idx) const

Public Member Functions inherited from mitk::ImageSource
Pointer	Clone () const

OutputType *	GetOutput ()
	Get the output data of this image source object. More...

const OutputType *	GetOutput () const

OutputType *	GetOutput (DataObjectPointerArraySizeType idx)

const OutputType *	GetOutput (DataObjectPointerArraySizeType idx) const

virtual itk::DataObject::Pointer	MakeOutput (DataObjectPointerArraySizeType idx) override
	Make a DataObject of the correct type to used as the specified output. More...

virtual itk::DataObject::Pointer	MakeOutput (const DataObjectIdentifierType &name) override

virtual vtkImageData *	GetVtkImageData ()

virtual const vtkImageData *	GetVtkImageData () const

Public Member Functions inherited from mitk::BaseDataSource
OutputType *	GetOutput ()

const OutputType *	GetOutput () const

OutputType *	GetOutput (DataObjectPointerArraySizeType idx)

const OutputType *	GetOutput (DataObjectPointerArraySizeType idx) const

virtual void	GraftOutput (OutputType *output)
	Graft the specified BaseData onto this BaseDataSource's output. More...

virtual void	GraftOutput (const DataObjectIdentifierType &key, OutputType *output)

virtual void	GraftNthOutput (unsigned int idx, OutputType *output)
	Graft the specified base data object onto this BaseDataSource's idx'th output. More...

bool	Updating () const
	Access itk::ProcessObject::m_Updating. More...

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from mitk::ImageToImageFilter
static const char *	GetStaticNameOfClass ()

static Pointer	New ()

Static Public Member Functions inherited from mitk::ImageSource
static const char *	GetStaticNameOfClass ()

static Pointer	New ()
	Method for creation through the object factory. More...

Static Public Member Functions inherited from mitk::BaseDataSource
static const char *	GetStaticNameOfClass ()

Protected Member Functions
	BoundingShapeCropper ()

virtual	~BoundingShapeCropper ()

virtual const PixelType	GetOutputPixelType ()

virtual void	GenerateInputRequestedRegion () override
	Reimplemented from ImageToImageFilter. More...

virtual void	GenerateOutputInformation () override

virtual void	GenerateData () override
	A version of GenerateData() specific for image processing filters. More...

template<typename TPixel , unsigned int VImageDimension>
void	CutImage (itk::Image< TPixel, VImageDimension > *inputItkImage, int timeStep)
	Template Function for cropping and masking images with scalar pixel type. More...

virtual void	ComputeData (mitk::Image *input3D, int boTimeStep)
	Process the image and create the output. More...

Protected Member Functions inherited from mitk::ImageToImageFilter
	ImageToImageFilter ()

virtual	~ImageToImageFilter ()

virtual void	PrintSelf (std::ostream &os, itk::Indent indent) const override

Protected Member Functions inherited from mitk::ImageSource
	ImageSource ()

virtual	~ImageSource ()

virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, itk::ThreadIdType threadId)
	If an imaging filter can be implemented as a multithreaded algorithm, the filter will provide an implementation of ThreadedGenerateData(). More...

virtual void	PrepareOutputs () override
	This method is intentionally left blank. More...

virtual void	AllocateOutputs ()
	The GenerateData method normally allocates the buffers for all of the outputs of a filter. More...

virtual void	BeforeThreadedGenerateData ()
	If an imaging filter needs to perform processing after the buffer has been allocated but before threads are spawned, the filter can can provide an implementation for BeforeThreadedGenerateData(). More...

virtual void	AfterThreadedGenerateData ()
	If an imaging filter needs to perform processing after all processing threads have completed, the filter can can provide an implementation for AfterThreadedGenerateData(). More...

virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion)
	Split the output's RequestedRegion into "num" pieces, returning region "i" as "splitRegion". More...

Protected Member Functions inherited from mitk::BaseDataSource
	BaseDataSource ()

virtual	~BaseDataSource ()

Additional Inherited Members
Public Types inherited from mitk::ImageToImageFilter
typedef ImageToImageFilter	Self

typedef ImageSource	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef Superclass::OutputImageRegionType	OutputImageRegionType

typedef mitk::Image	InputImageType

typedef InputImageType::Pointer	InputImagePointer

typedef InputImageType::ConstPointer	InputImageConstPointer

typedef SlicedData::RegionType	InputImageRegionType

Public Types inherited from mitk::ImageSource
typedef ImageSource	Self

typedef BaseDataSource	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef mitk::Image	OutputImageType
	Some convenient typedefs. More...

typedef OutputImageType	OutputType

typedef OutputImageType::Pointer	OutputImagePointer

typedef SlicedData::RegionType	OutputImageRegionType

Public Types inherited from mitk::BaseDataSource
typedef BaseDataSource	Self

typedef itk::ProcessObject	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef BaseData	OutputType

typedef itk::DataObject::DataObjectIdentifierType	DataObjectIdentifierType

Static Protected Member Functions inherited from mitk::ImageSource
static ITK_THREAD_RETURN_TYPE	ThreaderCallback (void *arg)
	Static function used as a "callback" by the MultiThreader. More...

Static Protected Member Functions inherited from mitk::BaseDataSource
static Pointer	New ()

Detailed Description

Crops or masks an Boundingbox defined by GeometryData out of an mitk Image.

Documentation Input Parameters are a mitk::GeometryData and an mitk::Image Masking: Pixel on the outside of the bounding box will have a pixelvalue of m_OutsideValue Cropping: Output image has the same size as the bounding box

Definition at line 40 of file mitkBoundingShapeCropper.h.

Constructor & Destructor Documentation

mitk::BoundingShapeCropper::BoundingShapeCropper ( )

protected

Definition at line 39 of file mitkBoundingShapeCropper.cpp.

mitk::BoundingShapeCropper::~BoundingShapeCropper ( )

protectedvirtual

Definition at line 52 of file mitkBoundingShapeCropper.cpp.

Member Function Documentation

Pointer mitk::BoundingShapeCropper::Clone ( ) const

void mitk::BoundingShapeCropper::ComputeData	(	mitk::Image *	input3D,
		int	boTimeStep
	)

protectedvirtual

Process the image and create the output.

Definition at line 257 of file mitkBoundingShapeCropper.cpp.

References AccessByItk_1, CutImage(), mitk::Image::GetDimension(), and MITK_ERROR.

Referenced by GenerateData().

template<typename TPixel , unsigned int VImageDimension>

void mitk::BoundingShapeCropper::CutImage	(	itk::Image< TPixel, VImageDimension > *	inputItkImage,
		int	timeStep
	)

protected

Template Function for cropping and masking images with scalar pixel type.

Definition at line 55 of file mitkBoundingShapeCropper.cpp.

References mitk::StatusBar::DisplayErrorText(), mitk::BaseData::GetGeometry(), mitk::ImageToImageFilter::GetInput(), mitk::StatusBar::GetInstance(), GetOutsideValue(), mitk::BaseGeometry::IndexToWorld(), mitk::itk2vtk(), MITK_INFO, mitk::New(), mitk::ImageToItk< TOutputImage >::New(), and mitk::vtk2itk().

Referenced by ComputeData().

void mitk::BoundingShapeCropper::GenerateData ( )

overrideprotectedvirtual

A version of GenerateData() specific for image processing filters.

This implementation will split the processing across multiple threads. The buffer is allocated by this method. Then the BeforeThreadedGenerateData() method is called (if provided). Then, a series of threads are spawned each calling ThreadedGenerateData(). After all the threads have completed processing, the AfterThreadedGenerateData() method is called (if provided). If an image processing filter cannot be threaded, the filter should provide an implementation of GenerateData(). That implementation is responsible for allocating the output buffer. If a filter an be threaded, it should NOT provide a GenerateData() method but should provide a ThreadedGenerateData() instead.