Generates the diffusion signal using a collection of idealised cylinder with zero radius: e^(-bd(ng)²) More...

#include <mitkAstroStickModel.h>

Inheritance diagram for mitk::AstroStickModel< ScalarType >:

Collaboration diagram for mitk::AstroStickModel< ScalarType >:

Public Types
typedef DiffusionSignalModel< ScalarType >::PixelType	PixelType

typedef DiffusionSignalModel< ScalarType >::GradientType	GradientType

typedef DiffusionSignalModel< ScalarType >::GradientListType	GradientListType

Public Types inherited from mitk::DiffusionSignalModel< ScalarType >
typedef itk::Image< double, 3 >	ItkDoubleImgType

typedef itk::VariableLengthVector< ScalarType >	PixelType

typedef itk::Vector< double, 3 >	GradientType

typedef std::vector< GradientType >	GradientListType

typedef itk::Statistics::MersenneTwisterRandomVariateGenerator	ItkRandGenType

Public Member Functions
	AstroStickModel ()

template<class OtherType >
	AstroStickModel (AstroStickModel< OtherType > *model)

	~AstroStickModel ()

PixelType	SimulateMeasurement ()

ScalarType	SimulateMeasurement (unsigned int dir)

void	SetFiberDirection (GradientType fiberDirection)

void	SetGradientList (GradientListType gradientList)

void	SetRandomizeSticks (bool randomize=true)
	Random stick configuration in each voxel. More...

bool	GetRandomizeSticks ()

void	SetBvalue (double bValue)
	b-value used to generate the artificial signal More...

double	GetBvalue ()

void	SetDiffusivity (double diffusivity)
	Scalar diffusion constant. More...

double	GetDiffusivity ()

void	SetNumSticks (unsigned int order)

unsigned int	GetNumSticks ()

GradientListType	GetSticks ()

Public Member Functions inherited from mitk::DiffusionSignalModel< ScalarType >
	DiffusionSignalModel ()

	~DiffusionSignalModel ()

GradientType	GetFiberDirection ()

GradientListType	GetGradientList ()

GradientType	GetGradientDirection (int i)

void	SetT2 (double T2)

double	GetT2 ()

void	SetT1 (double T1)

double	GetT1 ()

void	SetVolumeFractionImage (ItkDoubleImgType::Pointer img)

ItkDoubleImgType::Pointer	GetVolumeFractionImage ()

void	SetRandomGenerator (ItkRandGenType::Pointer randgen)

ItkRandGenType::Pointer	GetRandomGenerator ()

void	SetSeed (int s)

Protected Member Functions
GradientType	GetRandomDirection ()

Protected Attributes
double	m_BValue
	b-value used to generate the artificial signal More...

double	m_Diffusivity
	Scalar diffusion constant. More...

GradientListType	m_Sticks
	Stick container. More...

unsigned int	m_NumSticks
	Number of sticks. More...

bool	m_RandomizeSticks

Protected Attributes inherited from mitk::DiffusionSignalModel< ScalarType >
GradientType	m_FiberDirection
	Needed to generate anisotropc signal to determin direction of anisotropy. More...

GradientListType	m_GradientList
	Diffusion gradient direction container. More...

double	m_T2
	Tissue specific transversal relaxation time. More...

double	m_T1
	Tissue specific longitudinal relaxation time. More...

ItkDoubleImgType::Pointer	m_VolumeFractionImage
	Tissue specific volume fraction for each voxel (only relevant for non fiber compartments) More...

ItkRandGenType::Pointer	m_RandGen
	Random number generator. More...

Additional Inherited Members
Public Attributes inherited from mitk::DiffusionSignalModel< ScalarType >
unsigned int	m_CompartmentId
	GUI flag. Which compartment is this model assigned to? More...

Detailed Description

template<class ScalarType = double>
class mitk::AstroStickModel< ScalarType >

Generates the diffusion signal using a collection of idealised cylinder with zero radius: e^(-bd(ng)²)

Definition at line 31 of file mitkAstroStickModel.h.

Member Typedef Documentation

template<class ScalarType = double>

typedef DiffusionSignalModel< ScalarType >::GradientListType mitk::AstroStickModel< ScalarType >::GradientListType

Definition at line 55 of file mitkAstroStickModel.h.

template<class ScalarType = double>

typedef DiffusionSignalModel< ScalarType >::GradientType mitk::AstroStickModel< ScalarType >::GradientType

Definition at line 54 of file mitkAstroStickModel.h.

template<class ScalarType = double>

typedef DiffusionSignalModel< ScalarType >::PixelType mitk::AstroStickModel< ScalarType >::PixelType

Definition at line 53 of file mitkAstroStickModel.h.

Constructor & Destructor Documentation

template<class ScalarType >

AstroStickModel::AstroStickModel ( )

Definition at line 23 of file mitkAstroStickModel.cpp.

References mitk::AstroStickModel< ScalarType >::m_NumSticks, mitk::DiffusionSignalModel< ScalarType >::m_RandGen, mitk::AstroStickModel< ScalarType >::m_Sticks, and mitk::New().

template<class ScalarType = double>

template<class OtherType >

mitk::AstroStickModel< ScalarType >::AstroStickModel ( AstroStickModel< OtherType > * model )

inline

Definition at line 36 of file mitkAstroStickModel.h.

template<class ScalarType >

AstroStickModel::~AstroStickModel ( )

Definition at line 43 of file mitkAstroStickModel.cpp.

Member Function Documentation

template<class ScalarType = double>

double mitk::AstroStickModel< ScalarType >::GetBvalue ( )

inline

Definition at line 69 of file mitkAstroStickModel.h.

References mitk::AstroStickModel< ScalarType >::m_BValue.

Referenced by mitk::AstroStickModel< ScalarType >::AstroStickModel().

template<class ScalarType = double>

double mitk::AstroStickModel< ScalarType >::GetDiffusivity ( )

inline

Definition at line 72 of file mitkAstroStickModel.h.

References mitk::AstroStickModel< ScalarType >::m_Diffusivity.

Referenced by mitk::AstroStickModel< ScalarType >::AstroStickModel(), mitk::FiberfoxParameters< ScalarType >::LoadParameters(), and mitk::FiberfoxParameters< ScalarType >::SaveParameters().

template<class ScalarType = double>

unsigned int mitk::AstroStickModel< ScalarType >::GetNumSticks ( )

inline

Definition at line 112 of file mitkAstroStickModel.h.

References mitk::AstroStickModel< ScalarType >::m_NumSticks.

Referenced by mitk::AstroStickModel< ScalarType >::AstroStickModel().

template<class ScalarType >

AstroStickModel< ScalarType >::GradientType AstroStickModel::GetRandomDirection ( )

protected

Definition at line 84 of file mitkAstroStickModel.cpp.

template<class ScalarType = double>

bool mitk::AstroStickModel< ScalarType >::GetRandomizeSticks ( )

inline

Definition at line 66 of file mitkAstroStickModel.h.

References mitk::AstroStickModel< ScalarType >::m_RandomizeSticks.

Referenced by mitk::AstroStickModel< ScalarType >::AstroStickModel(), mitk::FiberfoxParameters< ScalarType >::LoadParameters(), and mitk::FiberfoxParameters< ScalarType >::SaveParameters().

template<class ScalarType = double>

GradientListType mitk::AstroStickModel< ScalarType >::GetSticks ( )

inline

Definition at line 113 of file mitkAstroStickModel.h.

References mitk::AstroStickModel< ScalarType >::m_Sticks.

Referenced by mitk::AstroStickModel< ScalarType >::AstroStickModel().

template<class ScalarType = double>

void mitk::AstroStickModel< ScalarType >::SetBvalue ( double bValue )

inline

b-value used to generate the artificial signal

Definition at line 68 of file mitkAstroStickModel.h.

References mitk::AstroStickModel< ScalarType >::m_BValue.

template<class ScalarType = double>

void mitk::AstroStickModel< ScalarType >::SetDiffusivity ( double diffusivity )

inline

Scalar diffusion constant.

Definition at line 71 of file mitkAstroStickModel.h.

References mitk::AstroStickModel< ScalarType >::m_Diffusivity.

Referenced by mitk::FiberfoxParameters< ScalarType >::LoadParameters().

template<class ScalarType = double>

void mitk::AstroStickModel< ScalarType >::SetFiberDirection ( GradientType fiberDirection )

inlinevirtual

Implements mitk::DiffusionSignalModel< ScalarType >.

Definition at line 62 of file mitkAstroStickModel.h.

References mitk::DiffusionSignalModel< ScalarType >::m_FiberDirection.

template<class ScalarType = double>

void mitk::AstroStickModel< ScalarType >::SetGradientList ( GradientListType gradientList )

inlinevirtual

Implements mitk::DiffusionSignalModel< ScalarType >.

Definition at line 63 of file mitkAstroStickModel.h.

References mitk::DiffusionSignalModel< ScalarType >::m_GradientList.

template<class ScalarType = double>

void mitk::AstroStickModel< ScalarType >::SetNumSticks ( unsigned int order )

inline

Definition at line 74 of file mitkAstroStickModel.h.

References mitk::AstroStickModel< ScalarType >::m_NumSticks, and mitk::AstroStickModel< ScalarType >::m_Sticks.

template<class ScalarType = double>

void mitk::AstroStickModel< ScalarType >::SetRandomizeSticks ( bool randomize = true )

inline

Random stick configuration in each voxel.

Definition at line 65 of file mitkAstroStickModel.h.

References mitk::AstroStickModel< ScalarType >::m_RandomizeSticks.

Referenced by mitk::FiberfoxParameters< ScalarType >::LoadParameters().

template<class ScalarType >

AstroStickModel< ScalarType >::PixelType AstroStickModel::SimulateMeasurement ( )

virtual

Actual signal generation

Implements mitk::DiffusionSignalModel< ScalarType >.

Definition at line 95 of file mitkAstroStickModel.cpp.

template<class ScalarType >

ScalarType AstroStickModel::SimulateMeasurement ( unsigned int dir )

virtual

Implements mitk::DiffusionSignalModel< ScalarType >.

Definition at line 49 of file mitkAstroStickModel.cpp.

Member Data Documentation

template<class ScalarType = double>

double mitk::AstroStickModel< ScalarType >::m_BValue

protected

b-value used to generate the artificial signal

Definition at line 118 of file mitkAstroStickModel.h.

Referenced by mitk::AstroStickModel< ScalarType >::AstroStickModel(), mitk::AstroStickModel< ScalarType >::GetBvalue(), and mitk::AstroStickModel< ScalarType >::SetBvalue().

template<class ScalarType = double>

double mitk::AstroStickModel< ScalarType >::m_Diffusivity

protected

Scalar diffusion constant.

Definition at line 119 of file mitkAstroStickModel.h.

Referenced by mitk::AstroStickModel< ScalarType >::AstroStickModel(), mitk::AstroStickModel< ScalarType >::GetDiffusivity(), and mitk::AstroStickModel< ScalarType >::SetDiffusivity().

template<class ScalarType = double>

unsigned int mitk::AstroStickModel< ScalarType >::m_NumSticks

protected

Number of sticks.

Definition at line 121 of file mitkAstroStickModel.h.

Referenced by mitk::AstroStickModel< ScalarType >::AstroStickModel(), mitk::AstroStickModel< ScalarType >::GetNumSticks(), and mitk::AstroStickModel< ScalarType >::SetNumSticks().

template<class ScalarType = double>

bool mitk::AstroStickModel< ScalarType >::m_RandomizeSticks

protected

Definition at line 122 of file mitkAstroStickModel.h.

Referenced by mitk::AstroStickModel< ScalarType >::AstroStickModel(), mitk::AstroStickModel< ScalarType >::GetRandomizeSticks(), and mitk::AstroStickModel< ScalarType >::SetRandomizeSticks().

template<class ScalarType = double>

GradientListType mitk::AstroStickModel< ScalarType >::m_Sticks

protected

Stick container.

Definition at line 120 of file mitkAstroStickModel.h.

Referenced by mitk::AstroStickModel< ScalarType >::AstroStickModel(), mitk::AstroStickModel< ScalarType >::GetSticks(), and mitk::AstroStickModel< ScalarType >::SetNumSticks().

The documentation for this class was generated from the following files:

Public Types

Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

template<class ScalarType = double> class mitk::AstroStickModel< ScalarType >

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<class ScalarType = double>
class mitk::AstroStickModel< ScalarType >