Describes a geometry defined by an vtkAbstractTransform and a plane. More...

#include <mitkAbstractTransformGeometry.h>

Inheritance diagram for mitk::AbstractTransformGeometry:

Collaboration diagram for mitk::AbstractTransformGeometry:

Public Types
typedef AbstractTransformGeometry	Self

typedef PlaneGeometry	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

Public Types inherited from mitk::PlaneGeometry
enum	PlaneOrientation { Axial, Sagittal, Frontal, None }

typedef PlaneGeometry	Self

typedef BaseGeometry	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

Public Types inherited from mitk::BaseGeometry
typedef BaseGeometry	Self

typedef itk::Object	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef GeometryTransformHolder::TransformType	TransformType

typedef itk::BoundingBox< unsigned long, 3, ScalarType >	BoundingBoxType

typedef BoundingBoxType::BoundsArrayType	BoundsArrayType

typedef BoundingBoxType::Pointer	BoundingBoxPointer

Public Member Functions
virtual std::vector< std::string >	GetClassHierarchy () const override

virtual const char *	GetClassName () const

Pointer	Clone () const

virtual vtkAbstractTransform *	GetVtkAbstractTransform () const
	Get the vtkAbstractTransform (stored in m_VtkAbstractTransform) More...

virtual unsigned long	GetMTime () const override

virtual const PlaneGeometry *	GetPlane ()
	Get the rectangular area that is used for transformation by m_VtkAbstractTransform and therewith defines the 2D manifold described by AbstractTransformGeometry. More...

virtual bool	Project (const mitk::Point3D &pt3d_mm, mitk::Point3D &projectedPt3d_mm) const override
	projects the given point onto the curved plane More...

virtual bool	Project (const mitk::Point3D &atPt3d_mm, const mitk::Vector3D &vec3d_mm, mitk::Vector3D &projectedVec3d_mm) const override
	projects a given vector starting from given point onto the curved plane More...

virtual bool	Project (const mitk::Vector3D &vec3d_mm, mitk::Vector3D &projectedVec3d_mm) const override
	projects a given vector starting from standard point onto the curved plane More...

virtual bool	Map (const mitk::Point3D &pt3d_mm, mitk::Point2D &pt2d_mm) const override
	Project a 3D point given in mm (pt3d_mm) onto the 2D geometry. The result is a 2D point in mm (pt2d_mm). More...

virtual void	Map (const mitk::Point2D &pt2d_mm, mitk::Point3D &pt3d_mm) const override
	Converts a 2D point given in mm (pt2d_mm) relative to the upper-left corner of the geometry into the corresponding world-coordinate (a 3D point in mm, pt3d_mm). More...

virtual bool	Map (const mitk::Point3D &atPt3d_mm, const mitk::Vector3D &vec3d_mm, mitk::Vector2D &vec2d_mm) const override
	Project a 3D vector given in mm (vec3d_mm) onto the 2D geometry. The result is a 2D vector in mm (vec2d_mm). More...

virtual void	Map (const mitk::Point2D &atPt2d_mm, const mitk::Vector2D &vec2d_mm, mitk::Vector3D &vec3d_mm) const override
	Converts a 2D vector given in mm (vec2d_mm) relative to the upper-left corner of the geometry into the corresponding world-coordinate (a 3D vector in mm, vec3d_mm). More...

virtual void	IndexToWorld (const mitk::Point2D &pt_units, mitk::Point2D &pt_mm) const override

virtual void	WorldToIndex (const mitk::Point2D &pt_mm, mitk::Point2D &pt_units) const override

virtual void	IndexToWorld (const mitk::Point2D &atPt2d_units, const mitk::Vector2D &vec_units, mitk::Vector2D &vec_mm) const override
	Convert (continuous or discrete) index coordinates of a vector vec_units to world coordinates (in mm) More...

virtual void	IndexToWorld (const mitk::Vector2D &vec_units, mitk::Vector2D &vec_mm) const override
	Convert (continuous or discrete) index coordinates of a vector vec_units to world coordinates (in mm) For further information about coordinates types, please see the Geometry documentation. More...

virtual void	WorldToIndex (const mitk::Point2D &atPt2d_mm, const mitk::Vector2D &vec_mm, mitk::Vector2D &vec_units) const override
	Convert world coordinates (in mm) of a vector vec_mm to (continuous!) index coordinates. More...

virtual void	WorldToIndex (const mitk::Vector2D &vec_mm, mitk::Vector2D &vec_units) const override
	Convert world coordinates (in mm) of a vector vec_mm to (continuous!) index coordinates. For further information about coordinates types, please see the Geometry documentation. More...

virtual bool	IsAbove (const Point3D &pt3d_mm, bool considerBoundingBox=false) const override
	Calculates, whether a point is below or above the plane. There are two different calculation methods, with or without consideration of the bounding box. More...

virtual mitk::ScalarType	GetParametricExtentInMM (int direction) const

virtual const itk::Transform< mitk::ScalarType, 3, 3 > *	GetParametricTransform () const

virtual void	SetOversampling (mitk::ScalarType oversampling)
	Change the parametric bounds to oversampling times the bounds of m_Plane. More...

virtual void	CalculateFrameGeometry ()
	Calculates the standard part of a BaseGeometry (IndexToWorldTransform and bounding box) around the curved geometry. Has to be implemented in subclasses. More...

virtual void	SetFrameGeometry (const mitk::BaseGeometry *frameGeometry)
	Set the frame geometry which is used as the standard part of an BaseGeometry (IndexToWorldTransform and bounding box) More...

virtual itk::LightObject::Pointer	InternalClone () const override
	clones the geometry More...

virtual const BoundingBox *	GetParametricBoundingBox ()
	Get the parametric bounding-box. More...

const BoundingBox::BoundsArrayType &	GetParametricBounds () const
	Get the parametric bounds. More...

mitk::ScalarType	GetParametricExtent (int direction) const
	Get the parametric extent. More...

Public Member Functions inherited from mitk::PlaneGeometry
Pointer	Clone () const

virtual void	InitializeStandardPlane (const BaseGeometry *geometry3D, PlaneOrientation planeorientation=Axial, ScalarType zPosition=0, bool frontside=true, bool rotated=false, bool top=true)
	Initialize a plane with orientation planeorientation (default: axial) with respect to BaseGeometry (default: identity). Spacing also taken from BaseGeometry. More...

virtual void	InitializeStandardPlane (const BaseGeometry *geometry3D, bool top, PlaneOrientation planeorientation=Axial, bool frontside=true, bool rotated=false)
	Initialize a plane with orientation planeorientation (default: axial) with respect to BaseGeometry (default: identity). Spacing also taken from BaseGeometry. More...

virtual void	InitializeStandardPlane (ScalarType width, ScalarType height, const AffineTransform3D *transform=nullptr, PlaneOrientation planeorientation=Axial, ScalarType zPosition=0, bool frontside=true, bool rotated=false, bool top=true)
	Initialize a plane with orientation planeorientation (default: axial) with respect to transform (default: identity) given width and height in units. More...

virtual void	InitializeStandardPlane (ScalarType width, ScalarType height, const Vector3D &spacing, PlaneOrientation planeorientation=Axial, ScalarType zPosition=0, bool frontside=true, bool rotated=false, bool top=true)
	Initialize plane with orientation planeorientation (default: axial) given width, height and spacing. More...

virtual void	InitializeStandardPlane (ScalarType width, ScalarType height, const Vector3D &rightVector, const Vector3D &downVector, const Vector3D *spacing=nullptr)
	Initialize plane by width and height in pixels, right-/down-vector (itk) to describe orientation in world-space (vectors will be normalized) and spacing (default: 1.0 mm in all directions). More...

virtual void	InitializeStandardPlane (ScalarType width, ScalarType height, const VnlVector &rightVector, const VnlVector &downVector, const Vector3D *spacing=nullptr)
	Initialize plane by width and height in pixels, right-/down-vector (vnl) to describe orientation in world-space (vectors will be normalized) and spacing (default: 1.0 mm in all directions). More...

virtual void	InitializeStandardPlane (const Vector3D &rightVector, const Vector3D &downVector, const Vector3D *spacing=nullptr)
	Initialize plane by right-/down-vector (itk) and spacing (default: 1.0 mm in all directions). More...

virtual void	InitializeStandardPlane (const VnlVector &rightVector, const VnlVector &downVector, const Vector3D *spacing=nullptr)
	Initialize plane by right-/down-vector (vnl) and spacing (default: 1.0 mm in all directions). More...

virtual void	InitializePlane (const Point3D &origin, const Vector3D &normal)
	Initialize plane by origin and normal (size is 1.0 mm in all directions, direction of right-/down-vector valid but undefined). More...

void	SetMatrixByVectors (const VnlVector &rightVector, const VnlVector &downVector, ScalarType thickness=1.0)
	Initialize plane by right-/down-vector. More...

Vector3D	GetNormal () const
	Normal of the plane. More...

VnlVector	GetNormalVnl () const
	Normal of the plane as VnlVector. More...

virtual ScalarType	SignedDistance (const Point3D &pt3d_mm) const

ScalarType	DistanceFromPlane (const Point3D &pt3d_mm) const
	Distance of the point from the plane (bounding-box not considered) More...

ScalarType	SignedDistanceFromPlane (const Point3D &pt3d_mm) const
	Signed distance of the point from the plane (bounding-box not considered) More...

ScalarType	DistanceFromPlane (const PlaneGeometry *plane) const
	Distance of the plane from another plane (bounding-box not considered) More...

ScalarType	SignedDistanceFromPlane (const PlaneGeometry *plane) const
	Signed distance of the plane from another plane (bounding-box not considered) More...

bool	IntersectionLine (const PlaneGeometry *plane, Line3D &crossline) const
	Calculate the intersecting line of two planes. More...

unsigned int	IntersectWithPlane2D (const PlaneGeometry *plane, Point2D &lineFrom, Point2D &lineTo) const
	Calculate two points where another plane intersects the border of this plane. More...

double	Angle (const PlaneGeometry *plane) const
	Calculate the angle between two planes. More...

double	Angle (const Line3D &line) const
	Calculate the angle between the plane and a line. More...

bool	IntersectionPoint (const Line3D &line, Point3D &intersectionPoint) const
	Calculate intersection point between the plane and a line. More...

bool	IntersectionPointParam (const Line3D &line, double &t) const
	Calculate line parameter of intersection point between the plane and a line. More...

bool	IsParallel (const PlaneGeometry *plane) const
	Returns whether the plane is parallel to another plane. More...

bool	IsOnPlane (const Point3D &point) const
	Returns whether the point is on the plane (bounding-box not considered) More...

bool	IsOnPlane (const Line3D &line) const
	Returns whether the line is on the plane (bounding-box not considered) More...

bool	IsOnPlane (const PlaneGeometry *plane) const
	Returns whether the plane is on the plane (bounding-box not considered) More...

Point3D	ProjectPointOntoPlane (const Point3D &pt) const
	Returns the lot from the point to the plane. More...

virtual void	ExecuteOperation (Operation *operation) override

virtual void	SetSizeInUnits (mitk::ScalarType width, mitk::ScalarType height)
	Set the width and height of this 2D-geometry in units by calling SetBounds. This does not change the extent in mm! More...

ScalarType	Distance (const Point3D &pt3d_mm) const
	Distance of the point from the geometry (bounding-box not considered) More...

void	SetReferenceGeometry (const mitk::BaseGeometry *geometry)
	Set the geometrical frame of reference in which this PlaneGeometry is placed. More...

const BaseGeometry *	GetReferenceGeometry () const
	Get the geometrical frame of reference for this PlaneGeometry. More...

bool	HasReferenceGeometry () const

Public Member Functions inherited from mitk::BaseGeometry
Pointer	Clone () const

const Point3D	GetOrigin () const
	Get the origin, e.g. the upper-left corner of the plane. More...

void	SetOrigin (const Point3D &origin)
	Set the origin, i.e. the upper-left corner of the plane. More...

const mitk::Vector3D	GetSpacing () const
	Get the spacing (size of a pixel). More...

void	SetSpacing (const mitk::Vector3D &aSpacing, bool enforceSetSpacing=false)
	Set the spacing (m_Spacing). More...

VnlVector	GetOriginVnl () const
	Get the origin as VnlVector. More...

virtual unsigned int	GetFrameOfReferenceID () const
	Get the DICOM FrameOfReferenceID referring to the used world coordinate system. More...

virtual void	SetFrameOfReferenceID (unsigned int _arg)
	Set the DICOM FrameOfReferenceID referring to the used world coordinate system. More...

virtual unsigned long	GetIndexToWorldTransformLastModified () const

void	Modified () const override
	Overload of function Modified() to prohibit several calls of Modified() using the ModifiedLock class. More...

virtual bool	IsValid () const
	Is this BaseGeometry in a state that is valid? More...

void	Initialize ()
	Initialize the BaseGeometry. More...

void	InitializeGeometry (Self *newGeometry) const

mitk::AffineTransform3D *	GetIndexToWorldTransform ()
	Get the transformation used to convert from index to world coordinates. More...

const mitk::AffineTransform3D *	GetIndexToWorldTransform () const
	Get the transformation used to convert from index to world coordinates. More...

void	SetIndexToWorldTransform (mitk::AffineTransform3D *transform)

void	SetIndexToWorldTransformByVtkMatrix (vtkMatrix4x4 *vtkmatrix)
	Convenience method for setting the ITK transform (m_IndexToWorldTransform) via an vtkMatrix4x4.The spacing of the new transform is copied to m_spacing. More...

void	SetIndexToWorldTransformWithoutChangingSpacing (mitk::AffineTransform3D *transform)

void	SetIndexToWorldTransformByVtkMatrixWithoutChangingSpacing (vtkMatrix4x4 *vtkmatrix)
	Convenience method for setting the ITK transform (m_IndexToWorldTransform) via an vtkMatrix4x4. This function keeps the original spacing. More...

vtkMatrix4x4 *	GetVtkMatrix ()

vtkLinearTransform *	GetVtkTransform () const
	Get the m_IndexToWorldTransform as a vtkLinearTransform. More...

void	SetIdentity ()
	Set the transform to identity, the spacing to 1 and origin to 0. More...

void	Compose (const TransformType *other, bool pre=0)
	Compose new IndexToWorldTransform with a given transform. More...

void	Compose (const vtkMatrix4x4 *vtkmatrix, bool pre=0)
	Compose new IndexToWorldTransform with a given vtkMatrix4x4. More...

void	Translate (const Vector3D &vector)
	Translate the origin by a vector. More...

void	WorldToIndex (const mitk::Point3D &pt_mm, mitk::Point3D &pt_units) const
	Convert world coordinates (in mm) of a point to (continuous!) index coordinates. More...

void	WorldToIndex (const mitk::Vector3D &vec_mm, mitk::Vector3D &vec_units) const
	Convert world coordinates (in mm) of a vector vec_mm to (continuous!) index coordinates. For further information about coordinates types, please see the Geometry documentation. More...

template<unsigned int VIndexDimension>
void	WorldToIndex (const mitk::Point3D &pt_mm, itk::Index< VIndexDimension > &index) const
	Convert world coordinates (in mm) of a point to (discrete!) index coordinates. This method rounds to integer indices! For further information about coordinates types, please see the Geometry documentation. More...

void	IndexToWorld (const mitk::Vector3D &vec_units, mitk::Vector3D &vec_mm) const
	Convert (continuous or discrete) index coordinates of a vector vec_units to world coordinates (in mm) For further information about coordinates types, please see the Geometry documentation. More...

void	IndexToWorld (const mitk::Point3D &pt_units, mitk::Point3D &pt_mm) const
	Convert (continuous or discrete) index coordinates of a point to world coordinates (in mm) For further information about coordinates types, please see the Geometry documentation. More...

template<unsigned int VIndexDimension>
void	IndexToWorld (const itk::Index< VIndexDimension > &index, mitk::Point3D &pt_mm) const
	Convert (discrete) index coordinates of a point to world coordinates (in mm) For further information about coordinates types, please see the Geometry documentation. More...

void	IndexToWorld (const mitk::Point3D &atPt3d_units, const mitk::Vector3D &vec_units, mitk::Vector3D &vec_mm) const
	Convert (continuous or discrete) index coordinates of a vector vec_units to world coordinates (in mm) More...

void	WorldToIndex (const mitk::Point3D &atPt3d_mm, const mitk::Vector3D &vec_mm, mitk::Vector3D &vec_units) const
	Convert world coordinates (in mm) of a vector vec_mm to (continuous!) index coordinates. More...

template<class TCoordRep >
void	ItkPhysicalPointToWorld (const itk::Point< TCoordRep, 3 > &itkPhysicalPoint, mitk::Point3D &pt_mm) const
	Deprecated for use with ITK version 3.10 or newer. Convert ITK physical coordinates of a point (in mm, but without a rotation) into MITK world coordinates (in mm) More...

template<class TCoordRep >
void	WorldToItkPhysicalPoint (const mitk::Point3D &pt_mm, itk::Point< TCoordRep, 3 > &itkPhysicalPoint) const
	Deprecated for use with ITK version 3.10 or newer. Convert world coordinates (in mm) of a point to ITK physical coordinates (in mm, but without a possible rotation) More...

virtual const BoundingBoxType *	GetBoundingBox ()

const BoundsArrayType	GetBounds () const

void	SetBounds (const BoundsArrayType &bounds)
	Set the bounding box (in index/unit coordinates) More...

void	SetFloatBounds (const float bounds[6])
	Set the bounding box (in index/unit coordinates) via a float array. More...

void	SetFloatBounds (const double bounds[6])
	Set the bounding box (in index/unit coordinates) via a double array. More...

VnlVector	GetMatrixColumn (unsigned int direction) const
	Get a VnlVector along bounding-box in the specified direction, length is spacing. More...

mitk::BoundingBox::Pointer	CalculateBoundingBoxRelativeToTransform (const mitk::AffineTransform3D *transform) const
	Calculates a bounding-box around the geometry relative to a coordinate system defined by a transform. More...

ScalarType	GetExtent (unsigned int direction) const
	Set the time bounds (in ms) More...

ScalarType	GetExtentInMM (int direction) const
	Get the extent of the bounding-box in the specified direction in mm. More...

Vector3D	GetAxisVector (unsigned int direction) const
	Get vector along bounding-box in the specified direction in mm. More...

virtual bool	Is2DConvertable ()
	Checks, if the given geometry can be converted to 2D without information loss e.g. when a 2D image is saved, the matrix is usually cropped to 2x2, and when you load it back to MITK it will be filled with standard values. This function checks, if information would be lost during this procedure. More...

Point3D	GetCenter () const
	Get the center of the bounding-box in mm. More...

double	GetDiagonalLength2 () const
	Get the squared length of the diagonal of the bounding-box in mm. More...

double	GetDiagonalLength () const
	Get the length of the diagonal of the bounding-box in mm. More...

Point3D	GetCornerPoint (int id) const
	Get the position of the corner number id (in world coordinates) More...

Point3D	GetCornerPoint (bool xFront=true, bool yFront=true, bool zFront=true) const
	Get the position of a corner (in world coordinates) More...

void	SetExtentInMM (int direction, ScalarType extentInMM)
	Set the extent of the bounding-box in the specified direction in mm. More...

bool	IsInside (const mitk::Point3D &p) const
	Test whether the point p (world coordinates in mm) is inside the bounding box. More...

bool	IsIndexInside (const mitk::Point3D &index) const
	Test whether the point p ((continous!)index coordinates in units) is inside the bounding box. More...

template<unsigned int VIndexDimension>
bool	IsIndexInside (const itk::Index< VIndexDimension > &index) const
	Convenience method for working with ITK indices. More...

virtual void	ChangeImageGeometryConsideringOriginOffset (const bool isAnImageGeometry)
	When switching from an Image Geometry to a normal Geometry (and the other way around), you have to. More...

virtual bool	GetImageGeometry () const
	Is this an ImageGeometry? More...

virtual void	SetImageGeometry (bool _arg)
	Define that this BaseGeometry is refering to an Image. More...

virtual void	ImageGeometryOn ()

virtual void	ImageGeometryOff ()

const GeometryTransformHolder *	GetGeometryTransformHolder () const

Public Member Functions inherited from mitk::OperationActor
	itkTypeMacroNoParent (OperationActor) virtual ~OperationActor()

Static Public Member Functions
static const char *	GetStaticNameOfClass ()

static Pointer	New ()

Static Public Member Functions inherited from mitk::PlaneGeometry
static const char *	GetStaticNameOfClass ()

static Pointer	New ()

static void	EnsurePerpendicularNormal (AffineTransform3D *transform)
	Change transform so that the third column of the transform-martix is perpendicular to the first two columns. More...

Static Public Member Functions inherited from mitk::BaseGeometry
static const char *	GetStaticNameOfClass ()

Protected Member Functions
	AbstractTransformGeometry ()

	AbstractTransformGeometry (const AbstractTransformGeometry &other)

virtual	~AbstractTransformGeometry ()

virtual void	SetVtkAbstractTransform (vtkAbstractTransform *aVtkAbstractTransform)
	Set the vtkAbstractTransform (stored in m_VtkAbstractTransform) More...

virtual void	SetPlane (const mitk::PlaneGeometry *aPlane)
	Set the rectangular area that is used for transformation by m_VtkAbstractTransform and therewith defines the 2D manifold described by ExternAbstractTransformGeometry. More...

virtual void	SetParametricBounds (const BoundingBox::BoundsArrayType &bounds)
	Set the parametric bounds. More...

virtual void	PreSetSpacing (const mitk::Vector3D &aSpacing) override
	PreSetSpacing. More...

Protected Member Functions inherited from mitk::PlaneGeometry
	PlaneGeometry ()

	PlaneGeometry (const PlaneGeometry &other)

virtual	~PlaneGeometry ()

virtual void	PrintSelf (std::ostream &os, itk::Indent indent) const override

virtual void	CheckBounds (const BoundsArrayType &bounds) override
	CheckBounds. More...

virtual void	CheckIndexToWorldTransform (mitk::AffineTransform3D *transform) override
	CheckIndexToWorldTransform. More...

Protected Member Functions inherited from mitk::BaseGeometry
	BaseGeometry ()

	BaseGeometry (const BaseGeometry &other)

virtual	~BaseGeometry ()

virtual unsigned int	GetNDimensions () const

bool	IsBoundingBoxNull () const

bool	IsIndexToWorldTransformNull () const

void	SetVtkMatrixDeepCopy (vtkTransform *vtktransform)

void	_SetSpacing (const mitk::Vector3D &aSpacing, bool enforceSetSpacing=false)

Protected Attributes
mitk::PlaneGeometry::Pointer	m_Plane
	The rectangular area that is used for transformation by m_VtkAbstractTransform and therewith defines the 2D manifold described by AbstractTransformGeometry. More...

itk::VtkAbstractTransform< ScalarType >::Pointer	m_ItkVtkAbstractTransform

mitk::BaseGeometry::Pointer	m_FrameGeometry

mitk::BoundingBox::Pointer	m_ParametricBoundingBox

Protected Attributes inherited from mitk::PlaneGeometry
const mitk::BaseGeometry *	m_ReferenceGeometry

Additional Inherited Members
Static Protected Member Functions inherited from mitk::BaseGeometry
static const std::string	GetTransformAsString (TransformType *transformType)

Detailed Description

Describes a geometry defined by an vtkAbstractTransform and a plane.

vtkAbstractTransform is the most general transform in vtk (superclass for all vtk geometric transformations). It defines an arbitrary 3D transformation, i.e., a transformation of 3D space into 3D space. In contrast, AbstractTransformGeometry (since it is a subclass of PlaneGeometry) describes a 2D manifold in 3D space. The 2D manifold is defined as the manifold that results from transforming a rectangle (given in m_Plane as a PlaneGeometry) by the vtkAbstractTransform (given in m_VtkAbstractTransform). The PlaneGeometry m_Plane is used to define the parameter space. 2D coordinates are first mapped by the PlaneGeometry and the resulting 3D coordinates are put into the vtkAbstractTransform.

Note: This class is the superclass of concrete geometries. Since there is no write access to the vtkAbstractTransform and m_Plane, this class is somehow abstract. For full write access from extern, use ExternAbstractTransformGeometry.; The bounds of the PlaneGeometry are used as the parametric bounds.

See also: ExternAbstractTransformGeometry

Definition at line 48 of file mitkAbstractTransformGeometry.h.

Member Typedef Documentation

typedef itk::SmartPointer<const Self> mitk::AbstractTransformGeometry::ConstPointer

Definition at line 51 of file mitkAbstractTransformGeometry.h.

typedef itk::SmartPointer<Self> mitk::AbstractTransformGeometry::Pointer

Definition at line 51 of file mitkAbstractTransformGeometry.h.

typedef AbstractTransformGeometry mitk::AbstractTransformGeometry::Self

Definition at line 51 of file mitkAbstractTransformGeometry.h.

typedef PlaneGeometry mitk::AbstractTransformGeometry::Superclass

Definition at line 51 of file mitkAbstractTransformGeometry.h.

Constructor & Destructor Documentation

mitk::AbstractTransformGeometry::AbstractTransformGeometry ( )

protected

Definition at line 20 of file mitkAbstractTransformGeometry.cpp.

References mitk::BaseGeometry::Initialize(), m_ItkVtkAbstractTransform, and itk::VtkAbstractTransform< TScalarType >::New().

mitk::AbstractTransformGeometry::AbstractTransformGeometry ( const AbstractTransformGeometry & other )

protected

Definition at line 26 of file mitkAbstractTransformGeometry.cpp.

References m_FrameGeometry, m_ItkVtkAbstractTransform, m_ParametricBoundingBox, m_Plane, itk::VtkAbstractTransform< TScalarType >::New(), SetFrameGeometry(), SetParametricBounds(), and SetPlane().

mitk::AbstractTransformGeometry::~AbstractTransformGeometry ( )

protectedvirtual

Definition at line 41 of file mitkAbstractTransformGeometry.cpp.

Member Function Documentation

void mitk::AbstractTransformGeometry::CalculateFrameGeometry ( )

virtual

Calculates the standard part of a BaseGeometry (IndexToWorldTransform and bounding box) around the curved geometry. Has to be implemented in subclasses.

See also: SetFrameGeometry

Definition at line 246 of file mitkAbstractTransformGeometry.cpp.

Pointer mitk::AbstractTransformGeometry::Clone ( ) const

virtual std::vector<std::string> mitk::AbstractTransformGeometry::GetClassHierarchy ( ) const

inlineoverridevirtual

Reimplemented from mitk::PlaneGeometry.

Reimplemented in mitk::LandmarkProjectorBasedCurvedGeometry, and mitk::ThinPlateSplineCurvedGeometry.

Definition at line 51 of file mitkAbstractTransformGeometry.h.

virtual const char* mitk::AbstractTransformGeometry::GetClassName ( ) const

virtual

Reimplemented from mitk::PlaneGeometry.

Reimplemented in mitk::LandmarkProjectorBasedCurvedGeometry, and mitk::ThinPlateSplineCurvedGeometry.

unsigned long mitk::AbstractTransformGeometry::GetMTime ( ) const

overridevirtual

Definition at line 268 of file mitkAbstractTransformGeometry.cpp.

virtual const BoundingBox* mitk::AbstractTransformGeometry::GetParametricBoundingBox ( )

virtual

Get the parametric bounding-box.

See AbstractTransformGeometry for an example usage of this.

const mitk::BoundingBox::BoundsArrayType & mitk::AbstractTransformGeometry::GetParametricBounds ( ) const

Get the parametric bounds.

See AbstractTransformGeometry for an example usage of this.

Definition at line 320 of file mitkAbstractTransformGeometry.cpp.

mitk::ScalarType mitk::AbstractTransformGeometry::GetParametricExtent ( int direction ) const

Get the parametric extent.

See AbstractTransformGeometry for an example usage of this.

Definition at line 326 of file mitkAbstractTransformGeometry.cpp.

References mitkThrow.

Referenced by mitk::ExtractDirectedPlaneImageFilter::GenerateData(), and mitk::ExtractSliceFilter::GenerateData().

mitk::ScalarType mitk::AbstractTransformGeometry::GetParametricExtentInMM ( int direction ) const

virtual

Definition at line 50 of file mitkAbstractTransformGeometry.cpp.

Referenced by mitk::ExtractDirectedPlaneImageFilter::GenerateData(), and mitk::ExtractSliceFilter::GenerateData().

const itk::Transform< mitk::ScalarType, 3, 3 > * mitk::AbstractTransformGeometry::GetParametricTransform ( ) const

virtual

Definition at line 59 of file mitkAbstractTransformGeometry.cpp.

virtual const PlaneGeometry* mitk::AbstractTransformGeometry::GetPlane ( )

virtual

Get the rectangular area that is used for transformation by m_VtkAbstractTransform and therewith defines the 2D manifold described by AbstractTransformGeometry.

Referenced by mitk::ExtractDirectedPlaneImageFilter::GenerateData(), mitk::ExtractSliceFilter::GenerateData(), mitk::ImageVtkMapper2D::GenerateDataForRenderer(), and mitk::DoseImageVtkMapper2D::GenerateDataForRenderer().

static const char* mitk::AbstractTransformGeometry::GetStaticNameOfClass ( )

inlinestatic

Definition at line 51 of file mitkAbstractTransformGeometry.h.

vtkAbstractTransform * mitk::AbstractTransformGeometry::GetVtkAbstractTransform ( ) const

virtual

Get the vtkAbstractTransform (stored in m_VtkAbstractTransform)

Definition at line 45 of file mitkAbstractTransformGeometry.cpp.

Referenced by mitk::ExtractDirectedPlaneImageFilter::GenerateData(), and mitk::ExtractSliceFilter::GenerateData().

void mitk::AbstractTransformGeometry::IndexToWorld	(	const mitk::Point2D &	pt_units,
		mitk::Point2D &	pt_mm
	)		const

overridevirtual

Reimplemented from mitk::PlaneGeometry.

Definition at line 169 of file mitkAbstractTransformGeometry.cpp.

void mitk::AbstractTransformGeometry::IndexToWorld	(	const mitk::Point2D &	atPt2d_units,
		const mitk::Vector2D &	vec_units,
		mitk::Vector2D &	vec_mm
	)		const

overridevirtual

Convert (continuous or discrete) index coordinates of a vector vec_units to world coordinates (in mm)

Deprecated:: First parameter (Point2D) is not used. If possible, please use void IndexToWorld(const

Reimplemented from mitk::PlaneGeometry.

Definition at line 179 of file mitkAbstractTransformGeometry.cpp.

References MITK_WARN.

void mitk::AbstractTransformGeometry::IndexToWorld	(	const mitk::Vector2D &	vec_units,
		mitk::Vector2D &	vec_mm
	)		const

overridevirtual

Convert (continuous or discrete) index coordinates of a vector vec_units to world coordinates (in mm) For further information about coordinates types, please see the Geometry documentation.

Reimplemented from mitk::PlaneGeometry.

Definition at line 188 of file mitkAbstractTransformGeometry.cpp.

itk::LightObject::Pointer mitk::AbstractTransformGeometry::InternalClone ( ) const

overridevirtual

clones the geometry

Overwrite in all sub-classes. Normally looks like:

//##  Self::Pointer newGeometry = new Self(*this);
//##  newGeometry->UnRegister();
//##  return newGeometry.GetPointer();
//## 

Reimplemented from mitk::PlaneGeometry.

Reimplemented in mitk::LandmarkProjectorBasedCurvedGeometry, and mitk::ThinPlateSplineCurvedGeometry.

Definition at line 290 of file mitkAbstractTransformGeometry.cpp.

bool mitk::AbstractTransformGeometry::IsAbove	(	const Point3D &	pt3d_mm,
		bool	considerBoundingBox = `false`
	)		const

overridevirtual

Calculates, whether a point is below or above the plane. There are two different calculation methods, with or without consideration of the bounding box.

Reimplemented from mitk::PlaneGeometry.

Definition at line 207 of file mitkAbstractTransformGeometry.cpp.

bool mitk::AbstractTransformGeometry::Map	(	const mitk::Point3D &	pt3d_mm,
		mitk::Point2D &	pt2d_mm
	)		const

overridevirtual

Project a 3D point given in mm (pt3d_mm) onto the 2D geometry. The result is a 2D point in mm (pt2d_mm).

The result is a 2D point in mm (pt2d_mm) relative to the upper-left corner of the geometry. To convert this point into units (e.g., pixels in case of an image), use WorldToIndex.

Returns: true projection was possible

See also: Project(const mitk::Point3D &pt3d_mm, mitk::Point3D &projectedPt3d_mm)

Reimplemented from mitk::PlaneGeometry.

Definition at line 80 of file mitkAbstractTransformGeometry.cpp.

void mitk::AbstractTransformGeometry::Map	(	const mitk::Point2D &	pt2d_mm,
		mitk::Point3D &	pt3d_mm
	)		const

overridevirtual

Converts a 2D point given in mm (pt2d_mm) relative to the upper-left corner of the geometry into the corresponding world-coordinate (a 3D point in mm, pt3d_mm).

To convert a 2D point given in units (e.g., pixels in case of an image) into a 2D point given in mm (as required by this method), use IndexToWorld.

Reimplemented from mitk::PlaneGeometry.

Definition at line 90 of file mitkAbstractTransformGeometry.cpp.

bool mitk::AbstractTransformGeometry::Map	(	const mitk::Point3D &	atPt3d_mm,
		const mitk::Vector3D &	vec3d_mm,
		mitk::Vector2D &	vec2d_mm
	)		const

overridevirtual

Project a 3D vector given in mm (vec3d_mm) onto the 2D geometry. The result is a 2D vector in mm (vec2d_mm).

The result is a 2D vector in mm (vec2d_mm) relative to the upper-left corner of the geometry. To convert this point into units (e.g., pixels in case of an image), use WorldToIndex.

Returns: true projection was possible

See also: Project(const mitk::Vector3D &vec3d_mm, mitk::Vector3D &projectedVec3d_mm)

Reimplemented from mitk::PlaneGeometry.

Definition at line 140 of file mitkAbstractTransformGeometry.cpp.

References mitk::itk2vtk(), and mitk::vtk2itk().

void mitk::AbstractTransformGeometry::Map	(	const mitk::Point2D &	atPt2d_mm,
		const mitk::Vector2D &	vec2d_mm,
		mitk::Vector3D &	vec3d_mm
	)		const

overridevirtual

Converts a 2D vector given in mm (vec2d_mm) relative to the upper-left corner of the geometry into the corresponding world-coordinate (a 3D vector in mm, vec3d_mm).

To convert a 2D vector given in units (e.g., pixels in case of an image) into a 2D vector given in mm (as required by this method), use IndexToWorld.

Reimplemented from mitk::PlaneGeometry.

Definition at line 155 of file mitkAbstractTransformGeometry.cpp.

References mitk::itk2vtk(), and mitk::vtk2itk().

static Pointer mitk::AbstractTransformGeometry::New ( )

static

virtual void mitk::AbstractTransformGeometry::PreSetSpacing ( const mitk::Vector3D & aSpacing )

inlineoverrideprotectedvirtual

PreSetSpacing.

These virtual function allows a different beahiour in subclasses. Do implement them in every subclass of BaseGeometry. If not needed, use {Superclass::PreSetSpacing();};

Reimplemented from mitk::PlaneGeometry.

Reimplemented in mitk::LandmarkProjectorBasedCurvedGeometry, and mitk::ThinPlateSplineCurvedGeometry.

Definition at line 233 of file mitkAbstractTransformGeometry.h.

bool mitk::AbstractTransformGeometry::Project	(	const mitk::Point3D &	pt3d_mm,
		mitk::Point3D &	projectedPt3d_mm
	)		const

overridevirtual

projects the given point onto the curved plane

Reimplemented from mitk::PlaneGeometry.

Definition at line 64 of file mitkAbstractTransformGeometry.cpp.

bool mitk::AbstractTransformGeometry::Project	(	const mitk::Point3D &	atPt3d_mm,
		const mitk::Vector3D &	vec3d_mm,
		mitk::Vector3D &	projectedVec3d_mm
	)		const

overridevirtual

projects a given vector starting from given point onto the curved plane

Warning: no satisfiyng implementation existing yet

Reimplemented from mitk::PlaneGeometry.

Definition at line 98 of file mitkAbstractTransformGeometry.cpp.

bool mitk::AbstractTransformGeometry::Project	(	const mitk::Vector3D &	vec3d_mm,
		mitk::Vector3D &	projectedVec3d_mm
	)		const

overridevirtual

projects a given vector starting from standard point onto the curved plane

Warning: no satisfying implementation existing yet

Reimplemented from mitk::PlaneGeometry.

Definition at line 129 of file mitkAbstractTransformGeometry.cpp.

References MITK_WARN.

void mitk::AbstractTransformGeometry::SetFrameGeometry ( const mitk::BaseGeometry * frameGeometry )

virtual

Set the frame geometry which is used as the standard part of an BaseGeometry (IndexToWorldTransform and bounding box)

Maybe used as a hint within which the interpolation shall occur by concrete sub-classes.

See also: CalculateFrameGeometry

Reimplemented in mitk::LandmarkProjectorBasedCurvedGeometry.

Definition at line 254 of file mitkAbstractTransformGeometry.cpp.

References mitk::BaseGeometry::Clone(), and mitk::BaseGeometry::IsValid().

Referenced by AbstractTransformGeometry().

void mitk::AbstractTransformGeometry::SetOversampling ( mitk::ScalarType oversampling )

virtual

Change the parametric bounds to oversampling times the bounds of m_Plane.

The change is done once (immediately). Later changes of the bounds of m_Plane will not influence the parametric bounds. (Consequently, there is no method to get the oversampling.)

Definition at line 276 of file mitkAbstractTransformGeometry.cpp.

void mitk::AbstractTransformGeometry::SetParametricBounds ( const BoundingBox::BoundsArrayType & bounds )

protectedvirtual

Set the parametric bounds.

Protected in this class, made public in some sub-classes, e.g., ExternAbstractTransformGeometry.

Definition at line 297 of file mitkAbstractTransformGeometry.cpp.

References mitk::New().

Referenced by AbstractTransformGeometry().

void mitk::AbstractTransformGeometry::SetPlane ( const mitk::PlaneGeometry * aPlane )

protectedvirtual

Set the rectangular area that is used for transformation by m_VtkAbstractTransform and therewith defines the 2D manifold described by ExternAbstractTransformGeometry.

Protected in this class, made public in ExternAbstractTransformGeometry.

Note: The bounds of the PlaneGeometry are used as the parametric bounds.; The PlaneGeometry is cloned, not linked/referenced.

Definition at line 225 of file mitkAbstractTransformGeometry.cpp.

References mitk::PlaneGeometry::Clone().

Referenced by AbstractTransformGeometry().

void mitk::AbstractTransformGeometry::SetVtkAbstractTransform ( vtkAbstractTransform * aVtkAbstractTransform )

protectedvirtual

Set the vtkAbstractTransform (stored in m_VtkAbstractTransform)

Protected in this class, made public in ExternAbstractTransformGeometry.

Definition at line 220 of file mitkAbstractTransformGeometry.cpp.

void mitk::AbstractTransformGeometry::WorldToIndex	(	const mitk::Point2D &	pt_mm,
		mitk::Point2D &	pt_units
	)		const

overridevirtual

Reimplemented from mitk::PlaneGeometry.

Definition at line 174 of file mitkAbstractTransformGeometry.cpp.

void mitk::AbstractTransformGeometry::WorldToIndex	(	const mitk::Point2D &	atPt2d_mm,
		const mitk::Vector2D &	vec_mm,
		mitk::Vector2D &	vec_units
	)		const

overridevirtual

Convert world coordinates (in mm) of a vector vec_mm to (continuous!) index coordinates.

Deprecated:: First parameter (Point2D) is not used. If possible, please use void WorldToIndex(const

Reimplemented from mitk::PlaneGeometry.

Definition at line 193 of file mitkAbstractTransformGeometry.cpp.

References MITK_WARN.

void mitk::AbstractTransformGeometry::WorldToIndex	(	const mitk::Vector2D &	vec_mm,
		mitk::Vector2D &	vec_units
	)		const

overridevirtual

Convert world coordinates (in mm) of a vector vec_mm to (continuous!) index coordinates. For further information about coordinates types, please see the Geometry documentation.

Reimplemented from mitk::PlaneGeometry.

Definition at line 202 of file mitkAbstractTransformGeometry.cpp.

Member Data Documentation

mitk::BaseGeometry::Pointer mitk::AbstractTransformGeometry::m_FrameGeometry

protected

Definition at line 216 of file mitkAbstractTransformGeometry.h.

Referenced by AbstractTransformGeometry().

itk::VtkAbstractTransform<ScalarType>::Pointer mitk::AbstractTransformGeometry::m_ItkVtkAbstractTransform

protected

Definition at line 214 of file mitkAbstractTransformGeometry.h.

Referenced by AbstractTransformGeometry().

mitk::BoundingBox::Pointer mitk::AbstractTransformGeometry::m_ParametricBoundingBox

mutableprotected

Definition at line 225 of file mitkAbstractTransformGeometry.h.

Referenced by AbstractTransformGeometry().

mitk::PlaneGeometry::Pointer mitk::AbstractTransformGeometry::m_Plane

protected

The rectangular area that is used for transformation by m_VtkAbstractTransform and therewith defines the 2D manifold described by AbstractTransformGeometry.

Definition at line 212 of file mitkAbstractTransformGeometry.h.

Referenced by AbstractTransformGeometry().

The documentation for this class was generated from the following files:

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation