Generates tract density images from input fiberbundles (Calamante 2010). More...

#include <itkTractDensityImageFilter.h>

Inheritance diagram for itk::TractDensityImageFilter< OutputImageType >:

Collaboration diagram for itk::TractDensityImageFilter< OutputImageType >:

Public Types
typedef TractDensityImageFilter	Self

typedef ProcessObject	Superclass

typedef SmartPointer< Self >	Pointer

typedef SmartPointer< const Self >	ConstPointer

typedef OutputImageType::PixelType	OutPixelType

Public Member Functions
Pointer	Clone () const

virtual const char *	GetClassName () const

virtual void	SetUpsamplingFactor (float _arg)
	use higher resolution for ouput image More...

virtual float	GetUpsamplingFactor ()
	use higher resolution for ouput image More...

virtual void	SetInvertImage (bool _arg)
	voxelvalue = 1-voxelvalue More...

virtual bool	GetInvertImage ()
	voxelvalue = 1-voxelvalue More...

virtual void	SetBinaryOutput (bool _arg)
	generate binary fiber envelope More...

virtual bool	GetBinaryOutput ()
	generate binary fiber envelope More...

virtual void	SetOutputAbsoluteValues (bool _arg)
	output absolute values of the number of fibers per voxel More...

virtual bool	GetOutputAbsoluteValues ()
	output absolute values of the number of fibers per voxel More...

virtual void	SetUseImageGeometry (bool _arg)
	use input image geometry to initialize output image More...

virtual bool	GetUseImageGeometry ()
	use input image geometry to initialize output image More...

virtual void	SetFiberBundle (mitk::FiberBundle::Pointer _arg)
	input fiber bundle More...

virtual void	SetInputImage (typename OutputImageType::Pointer _arg)
	use input image geometry to initialize output image More...

virtual void	SetUseTrilinearInterpolation (bool _arg)

virtual void	SetDoFiberResampling (bool _arg)

void	GenerateData ()

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
itk::Point< float, 3 >	GetItkPoint (double point[3])

	TractDensityImageFilter ()

virtual	~TractDensityImageFilter ()

Protected Attributes
OutputImageType::Pointer	m_InputImage
	use input image geometry to initialize output image More...

mitk::FiberBundle::Pointer	m_FiberBundle
	input fiber bundle More...

float	m_UpsamplingFactor
	use higher resolution for ouput image More...

bool	m_InvertImage
	voxelvalue = 1-voxelvalue More...

bool	m_BinaryOutput
	generate binary fiber envelope More...

bool	m_UseImageGeometry
	use input image geometry to initialize output image More...

bool	m_OutputAbsoluteValues
	do not normalize image values to 0-1 More...

bool	m_UseTrilinearInterpolation

bool	m_DoFiberResampling

Detailed Description

template<class OutputImageType>
class itk::TractDensityImageFilter< OutputImageType >

Generates tract density images from input fiberbundles (Calamante 2010).

Definition at line 31 of file itkTractDensityImageFilter.h.

Member Typedef Documentation

template<class OutputImageType>

typedef SmartPointer< const Self > itk::TractDensityImageFilter< OutputImageType >::ConstPointer

Definition at line 38 of file itkTractDensityImageFilter.h.

template<class OutputImageType>

typedef OutputImageType::PixelType itk::TractDensityImageFilter< OutputImageType >::OutPixelType

Definition at line 40 of file itkTractDensityImageFilter.h.

template<class OutputImageType>

typedef SmartPointer< Self > itk::TractDensityImageFilter< OutputImageType >::Pointer

Definition at line 37 of file itkTractDensityImageFilter.h.

template<class OutputImageType>

typedef TractDensityImageFilter itk::TractDensityImageFilter< OutputImageType >::Self

Definition at line 35 of file itkTractDensityImageFilter.h.

template<class OutputImageType>

typedef ProcessObject itk::TractDensityImageFilter< OutputImageType >::Superclass

Definition at line 36 of file itkTractDensityImageFilter.h.

Constructor & Destructor Documentation

template<class OutputImageType >

itk::TractDensityImageFilter< OutputImageType >::TractDensityImageFilter ( )

protected

Definition at line 31 of file itkTractDensityImageFilter.cpp.

template<class OutputImageType >

itk::TractDensityImageFilter< OutputImageType >::~TractDensityImageFilter ( )

protectedvirtual

Definition at line 46 of file itkTractDensityImageFilter.cpp.

Member Function Documentation

template<class OutputImageType>

Pointer itk::TractDensityImageFilter< OutputImageType >::Clone ( ) const

template<class OutputImageType >

void itk::TractDensityImageFilter< OutputImageType >::GenerateData ( )

Definition at line 61 of file itkTractDensityImageFilter.cpp.

References max(), and MITK_INFO.

template<class OutputImageType>

virtual bool itk::TractDensityImageFilter< OutputImageType >::GetBinaryOutput ( )

virtual

generate binary fiber envelope

template<class OutputImageType>

virtual const char* itk::TractDensityImageFilter< OutputImageType >::GetClassName ( ) const

virtual

template<class OutputImageType>

virtual bool itk::TractDensityImageFilter< OutputImageType >::GetInvertImage ( )

virtual

voxelvalue = 1-voxelvalue

template<class OutputImageType >

itk::Point< float, 3 > itk::TractDensityImageFilter< OutputImageType >::GetItkPoint ( double point[3] )

protected

Definition at line 51 of file itkTractDensityImageFilter.cpp.

template<class OutputImageType>

virtual bool itk::TractDensityImageFilter< OutputImageType >::GetOutputAbsoluteValues ( )

virtual

output absolute values of the number of fibers per voxel

template<class OutputImageType>

virtual float itk::TractDensityImageFilter< OutputImageType >::GetUpsamplingFactor ( )

virtual

use higher resolution for ouput image

template<class OutputImageType>

virtual bool itk::TractDensityImageFilter< OutputImageType >::GetUseImageGeometry ( )

virtual

use input image geometry to initialize output image

template<class OutputImageType>

static Pointer itk::TractDensityImageFilter< OutputImageType >::New ( )

static

Referenced by mitk::TrackingForestHandler< ShOrder, NumberOfSignalFeatures >::PreprocessInputDataForTraining().

template<class OutputImageType>

virtual void itk::TractDensityImageFilter< OutputImageType >::SetBinaryOutput ( bool _arg )

virtual

generate binary fiber envelope

template<class OutputImageType>

virtual void itk::TractDensityImageFilter< OutputImageType >::SetDoFiberResampling ( bool _arg )

virtual

template<class OutputImageType>

virtual void itk::TractDensityImageFilter< OutputImageType >::SetFiberBundle ( mitk::FiberBundle::Pointer _arg )

virtual

input fiber bundle

template<class OutputImageType>

virtual void itk::TractDensityImageFilter< OutputImageType >::SetInputImage ( typename OutputImageType::Pointer _arg )

virtual

use input image geometry to initialize output image

template<class OutputImageType>

virtual void itk::TractDensityImageFilter< OutputImageType >::SetInvertImage ( bool _arg )

virtual

voxelvalue = 1-voxelvalue

template<class OutputImageType>

virtual void itk::TractDensityImageFilter< OutputImageType >::SetOutputAbsoluteValues ( bool _arg )

virtual

output absolute values of the number of fibers per voxel

template<class OutputImageType>

virtual void itk::TractDensityImageFilter< OutputImageType >::SetUpsamplingFactor ( float _arg )

virtual

use higher resolution for ouput image

template<class OutputImageType>

virtual void itk::TractDensityImageFilter< OutputImageType >::SetUseImageGeometry ( bool _arg )

virtual

use input image geometry to initialize output image

template<class OutputImageType>

virtual void itk::TractDensityImageFilter< OutputImageType >::SetUseTrilinearInterpolation ( bool _arg )

virtual

Member Data Documentation

template<class OutputImageType>

bool itk::TractDensityImageFilter< OutputImageType >::m_BinaryOutput

protected

generate binary fiber envelope

Definition at line 74 of file itkTractDensityImageFilter.h.

template<class OutputImageType>

bool itk::TractDensityImageFilter< OutputImageType >::m_DoFiberResampling

protected

Definition at line 78 of file itkTractDensityImageFilter.h.

template<class OutputImageType>

mitk::FiberBundle::Pointer itk::TractDensityImageFilter< OutputImageType >::m_FiberBundle

protected

input fiber bundle

Definition at line 71 of file itkTractDensityImageFilter.h.

template<class OutputImageType>

OutputImageType::Pointer itk::TractDensityImageFilter< OutputImageType >::m_InputImage

protected

use input image geometry to initialize output image

Definition at line 70 of file itkTractDensityImageFilter.h.

template<class OutputImageType>

bool itk::TractDensityImageFilter< OutputImageType >::m_InvertImage

protected

voxelvalue = 1-voxelvalue

Definition at line 73 of file itkTractDensityImageFilter.h.

template<class OutputImageType>

bool itk::TractDensityImageFilter< OutputImageType >::m_OutputAbsoluteValues

protected

do not normalize image values to 0-1

Definition at line 76 of file itkTractDensityImageFilter.h.

template<class OutputImageType>

float itk::TractDensityImageFilter< OutputImageType >::m_UpsamplingFactor

protected

use higher resolution for ouput image

Definition at line 72 of file itkTractDensityImageFilter.h.

template<class OutputImageType>

bool itk::TractDensityImageFilter< OutputImageType >::m_UseImageGeometry

protected

use input image geometry to initialize output image

Definition at line 75 of file itkTractDensityImageFilter.h.

template<class OutputImageType>

bool itk::TractDensityImageFilter< OutputImageType >::m_UseTrilinearInterpolation

protected

Definition at line 77 of file itkTractDensityImageFilter.h.

The documentation for this class was generated from the following files:

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Detailed Description

template<class OutputImageType> class itk::TractDensityImageFilter< OutputImageType >

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<class OutputImageType>
class itk::TractDensityImageFilter< OutputImageType >