itk::SkeletonizationFilter< TInputImage, TOutputImage > Class Template Reference

Skeletonization part of the TBSS pipeline. More...

#include <itkSkeletonizationFilter.h>

Inheritance diagram for itk::SkeletonizationFilter< TInputImage, TOutputImage >:

Collaboration diagram for itk::SkeletonizationFilter< TInputImage, TOutputImage >:

Public Types
typedef TInputImage	InputImageType
typedef itk::CovariantVector< int, 3 >	VectorType
typedef itk::Image< VectorType, 3 >	VectorImageType
typedef TOutputImage	OutputImageType
typedef itk::VectorImage< int, 3 >	GradientImageType
typedef SkeletonizationFilter	Self
typedef ImageToImageFilter< InputImageType, OutputImageType >	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer

Public Member Functions
Pointer	Clone () const
virtual void	GenerateData ()
	Performs the work. More...
GradientImageType::Pointer	GetGradientImage ()
	Output the gradient image as itkVectorImage. More...
VectorImageType::Pointer	GetVectorImage ()
	Output the gradient image as an itkImage containing vector. More...

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	SkeletonizationFilter ()
virtual	~SkeletonizationFilter ()
int	round (float x)

Protected Attributes
VectorImageType::Pointer	m_DirectionImage

Detailed Description

template<class TInputImage, class TOutputImage>
class itk::SkeletonizationFilter< TInputImage, TOutputImage >

Skeletonization part of the TBSS pipeline.

This class takes a 3D image which is typically the mean FA image that is calculated after registration by the FSL TBSS pipeline (see http://fsl.fmrib.ox.ac.uk/fsl/fsl4.0/tbss/index for the user manual) and performs the non-maximum-suppression to create a white matter skeleton.

The skeletonization algorithm is described in Smith et al., 2009. http://dx.doi.org/10.1016/j.neuroimage.2006.02.024 )

Definition at line 40 of file itkSkeletonizationFilter.h.

Member Typedef Documentation

template<class TInputImage , class TOutputImage >

typedef SmartPointer<const Self> itk::SkeletonizationFilter< TInputImage, TOutputImage >::ConstPointer

Definition at line 68 of file itkSkeletonizationFilter.h.

template<class TInputImage , class TOutputImage >

typedef itk::VectorImage<int, 3> itk::SkeletonizationFilter< TInputImage, TOutputImage >::GradientImageType

Definition at line 57 of file itkSkeletonizationFilter.h.

template<class TInputImage , class TOutputImage >

typedef TInputImage itk::SkeletonizationFilter< TInputImage, TOutputImage >::InputImageType

Typedef for input ImageType.

Definition at line 47 of file itkSkeletonizationFilter.h.

template<class TInputImage , class TOutputImage >

typedef TOutputImage itk::SkeletonizationFilter< TInputImage, TOutputImage >::OutputImageType

Typedef for output ImageType.

Definition at line 55 of file itkSkeletonizationFilter.h.

template<class TInputImage , class TOutputImage >

typedef SmartPointer<Self> itk::SkeletonizationFilter< TInputImage, TOutputImage >::Pointer

Definition at line 66 of file itkSkeletonizationFilter.h.

template<class TInputImage , class TOutputImage >

typedef SkeletonizationFilter itk::SkeletonizationFilter< TInputImage, TOutputImage >::Self

Definition at line 61 of file itkSkeletonizationFilter.h.

template<class TInputImage , class TOutputImage >

typedef ImageToImageFilter<InputImageType, OutputImageType> itk::SkeletonizationFilter< TInputImage, TOutputImage >::Superclass

Superclass

Definition at line 64 of file itkSkeletonizationFilter.h.

template<class TInputImage , class TOutputImage >

typedef itk::Image<VectorType, 3> itk::SkeletonizationFilter< TInputImage, TOutputImage >::VectorImageType

Definition at line 51 of file itkSkeletonizationFilter.h.

template<class TInputImage , class TOutputImage >

typedef itk::CovariantVector<int,3> itk::SkeletonizationFilter< TInputImage, TOutputImage >::VectorType

Definition at line 49 of file itkSkeletonizationFilter.h.

Constructor & Destructor Documentation

template<class TInputImage , class TOutputImage >

itk::SkeletonizationFilter< TInputImage, TOutputImage >::SkeletonizationFilter ( )

protected

template<class TInputImage , class TOutputImage >

virtual itk::SkeletonizationFilter< TInputImage, TOutputImage >::~SkeletonizationFilter ( )

protectedvirtual

Member Function Documentation

template<class TInputImage , class TOutputImage >

Pointer itk::SkeletonizationFilter< TInputImage, TOutputImage >::Clone

(

)

const

template<class TInputImage , class TOutputImage >

virtual void itk::SkeletonizationFilter< TInputImage, TOutputImage >::GenerateData ( )

virtual

Performs the work.

template<class TInputImage , class TOutputImage >

GradientImageType::Pointer itk::SkeletonizationFilter< TInputImage, TOutputImage >::GetGradientImage

(

)

Output the gradient image as itkVectorImage.

Output the gradient image by first converting it to an itk vector image

template<class TInputImage , class TOutputImage >

VectorImageType::Pointer itk::SkeletonizationFilter< TInputImage, TOutputImage >::GetVectorImage ( )

inline

Output the gradient image as an itkImage containing vector.

Definition at line 84 of file itkSkeletonizationFilter.h.

References itk::SkeletonizationFilter< TInputImage, TOutputImage >::m_DirectionImage.

template<class TInputImage , class TOutputImage >

static Pointer itk::SkeletonizationFilter< TInputImage, TOutputImage >::New ( )

static

template<class TInputImage , class TOutputImage >

int itk::SkeletonizationFilter< TInputImage, TOutputImage >::round ( float  x )

inlineprotected

Definition at line 100 of file itkSkeletonizationFilter.h.

Member Data Documentation

template<class TInputImage , class TOutputImage >

VectorImageType::Pointer itk::SkeletonizationFilter< TInputImage, TOutputImage >::m_DirectionImage

protected

Definition at line 98 of file itkSkeletonizationFilter.h.

Referenced by itk::SkeletonizationFilter< TInputImage, TOutputImage >::GetVectorImage().

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The documentation for this class was generated from the following file:

• itkSkeletonizationFilter.h