itk::MLBSTrackingFilter< ShOrder, NumImageFeatures > Class Template Reference

Performes deterministic streamline tracking on the input tensor image. More...

#include <itkMLBSTrackingFilter.h>

Inheritance diagram for itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >:

Collaboration diagram for itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >:

Public Types
typedef MLBSTrackingFilter	Self
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef ImageToImageFilter< VectorImage< short, 3 >, Image< double, 3 > >	Superclass
typedef Superclass::InputImageType	InputImageType
typedef Superclass::InputImageRegionType	InputImageRegionType
typedef Image< Vector< float, NumImageFeatures >, 3 >	FeatureImageType
typedef itk::Image< unsigned char, 3 >	ItkUcharImgType
typedef itk::Image< double, 3 >	ItkDoubleImgType
typedef itk::Image< float, 3 >	ItkFloatImgType
typedef vtkSmartPointer< vtkPolyData >	PolyDataType
typedef std::deque< itk::Point< double > >	FiberType
typedef std::vector< FiberType >	BundleType

Public Member Functions
Pointer	Clone () const
virtual const char *	GetClassName () const
virtual PolyDataType	GetFiberPolyData ()
	Output fibers. More...
virtual void	SetSeedImage (ItkUcharImgType::Pointer _arg)
	Seeds are only placed inside of this mask. More...
virtual void	SetMaskImage (ItkUcharImgType::Pointer _arg)
	Tracking is only performed inside of this mask image. More...
virtual void	SetSeedsPerVoxel (int _arg)
	One seed placed in the center of each voxel or multiple seeds randomly placed inside each voxel. More...
virtual void	SetStepSize (double _arg)
	Integration step size in mm. More...
virtual void	SetMinTractLength (double _arg)
	Shorter tracts are discarded. More...
virtual void	SetMaxTractLength (double _arg)
	Streamline progression stops if tract is longer than specified. More...
virtual void	SetAngularThreshold (double _arg)
	Probabilities for directions with larger angular deviation from previous direction is set to 0. More...
virtual void	SetSamplingDistance (double _arg)
	Maximum distance of sampling points in mm. More...
virtual void	SetNumberOfSamples (int _arg)
	Number of sampling points. More...
virtual void	SetStoppingRegions (ItkUcharImgType::Pointer _arg)
	Streamlines entering a stopping region will stop immediately. More...
virtual void	SetDemoMode (bool _arg)
virtual void	SetRemoveWmEndFibers (bool _arg)
	Checks if fiber ending is located in the white matter. If this is the case, the streamline is discarded. More...
virtual void	SetAposterioriCurvCheck (bool _arg)
	Checks fiber curvature (angular deviation across 5mm) is larger than 30°. If yes, the streamline progression is stopped. More...
virtual void	SetAvoidStop (bool _arg)
	Use additional sampling points to avoid premature streamline termination. More...
virtual void	SetRandomSampling (bool _arg)
	If true, the sampling points are distributed randomly around the current position, not sphericall in the specified sampling distance. More...
void	SetForestHandler (mitk::TrackingForestHandler< ShOrder > fh)

Static Public Member Functions
static Pointer	New ()

Public Attributes
volatile bool	m_PauseTracking
bool	m_AbortTracking
bool	m_BuildFibersFinished
int	m_BuildFibersReady
volatile bool	m_Stop
mitk::PointSet::Pointer	m_SamplingPointset
mitk::PointSet::Pointer	m_AlternativePointset

Protected Member Functions
	MLBSTrackingFilter ()
	~MLBSTrackingFilter ()
void	CalculateNewPosition (itk::Point< double, 3 > &pos, vnl_vector_fixed< double, 3 > &dir)
	Calculate next integration step. More...
double	FollowStreamline (itk::Point< double, 3 > pos, vnl_vector_fixed< double, 3 > dir, FiberType *fib, double tractLength, bool front)
	Start streamline in one direction. More...
bool	IsValidPosition (itk::Point< double, 3 > &pos)
	Are we outside of the mask image? More...
vnl_vector_fixed< double, 3 >	GetNewDirection (itk::Point< double, 3 > &pos, vnl_vector_fixed< double, 3 > &olddir)
	Determine new direction by sample voting at the current position taking the last progression direction into account. More...
double	GetRandDouble (double min=-1, double max=1)
double	RoundToNearest (double num)
void	BeforeThreadedGenerateData () override
void	ThreadedGenerateData (const InputImageRegionType &outputRegionForThread, ThreadIdType threadId) override
void	AfterThreadedGenerateData () override
void	BuildFibers (bool check)
int	CheckCurvature (FiberType *fib, bool front)

Protected Attributes
PolyDataType	m_FiberPolyData
vtkSmartPointer< vtkPoints >	m_Points
vtkSmartPointer< vtkCellArray >	m_Cells
BundleType	m_Tractogram
double	m_AngularThreshold
double	m_StepSize
int	m_MaxLength
double	m_MinTractLength
double	m_MaxTractLength
int	m_SeedsPerVoxel
bool	m_RandomSampling
double	m_SamplingDistance
int	m_NumberOfSamples
SimpleFastMutexLock	m_Mutex
ItkUcharImgType::Pointer	m_StoppingRegions
ItkUcharImgType::Pointer	m_SeedImage
ItkUcharImgType::Pointer	m_MaskImage
bool	m_AposterioriCurvCheck
bool	m_RemoveWmEndFibers
bool	m_AvoidStop
int	m_Threads
bool	m_DemoMode
mitk::TrackingForestHandler< ShOrder >	m_ForestHandler
InputImageType::Pointer	m_InputImage
std::vector< PolyDataType >	m_PolyDataContainer
std::chrono::time_point< std::chrono::system_clock >	m_StartTime
std::chrono::time_point< std::chrono::system_clock >	m_EndTime

Detailed Description

template<int ShOrder = 6, int NumImageFeatures = 100>
class itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >

Performes deterministic streamline tracking on the input tensor image.

Definition at line 54 of file itkMLBSTrackingFilter.h.

Member Typedef Documentation

template<int ShOrder = 6, int NumImageFeatures = 100>

typedef std::vector< FiberType > itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::BundleType

Definition at line 81 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

typedef SmartPointer<const Self> itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::ConstPointer

Definition at line 61 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

typedef Image< Vector< float, NumImageFeatures > , 3 > itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::FeatureImageType

Definition at line 66 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

typedef std::deque< itk::Point<double> > itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::FiberType

Definition at line 80 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

typedef Superclass::InputImageRegionType itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::InputImageRegionType

Definition at line 65 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

typedef Superclass::InputImageType itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::InputImageType

Definition at line 64 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

typedef itk::Image<double, 3> itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::ItkDoubleImgType

Definition at line 76 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

typedef itk::Image<float, 3> itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::ItkFloatImgType

Definition at line 77 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

typedef itk::Image<unsigned char, 3> itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::ItkUcharImgType

Definition at line 75 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

typedef SmartPointer<Self> itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::Pointer

Definition at line 60 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

typedef vtkSmartPointer< vtkPolyData > itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::PolyDataType

Definition at line 78 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

typedef MLBSTrackingFilter itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::Self

Definition at line 59 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

typedef ImageToImageFilter< VectorImage< short, 3 >, Image< double, 3 > > itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::Superclass

Definition at line 62 of file itkMLBSTrackingFilter.h.

Constructor & Destructor Documentation

template<int ShOrder, int NumImageFeatures>

itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::MLBSTrackingFilter ( )

protected

Definition at line 37 of file itkMLBSTrackingFilter.cpp.

template<int ShOrder = 6, int NumImageFeatures = 100>

itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::~MLBSTrackingFilter ( )

inlineprotected

Definition at line 115 of file itkMLBSTrackingFilter.h.

Member Function Documentation

template<int ShOrder, int NumImageFeatures>

void itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::AfterThreadedGenerateData ( )

overrideprotected

Definition at line 577 of file itkMLBSTrackingFilter.cpp.

References MITK_INFO.

template<int ShOrder, int NumImageFeatures>

void itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::BeforeThreadedGenerateData ( void  )

overrideprotected

Definition at line 70 of file itkMLBSTrackingFilter.cpp.

References mitk::eps, mitk::New(), and mitk::PointSet::New().

template<int ShOrder, int NumImageFeatures>

void itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::BuildFibers ( bool  check )

protected

Definition at line 545 of file itkMLBSTrackingFilter.cpp.

References mitk::New().

template<int ShOrder, int NumImageFeatures>

void itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::CalculateNewPosition ( itk::Point< double, 3 > &  pos, vnl_vector_fixed< double, 3 > &  dir  )

protected

Calculate next integration step.

Definition at line 164 of file itkMLBSTrackingFilter.cpp.

template<int ShOrder, int NumImageFeatures>

int itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::CheckCurvature ( FiberType *  fib, bool  front  )

protected

Definition at line 366 of file itkMLBSTrackingFilter.cpp.

References M_PI.

template<int ShOrder = 6, int NumImageFeatures = 100>

Pointer itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::Clone

(

)

const

template<int ShOrder, int NumImageFeatures>

double itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::FollowStreamline ( itk::Point< double, 3 >  pos, vnl_vector_fixed< double, 3 >  dir, FiberType *  fib, double  tractLength, bool  front  )

protected

Start streamline in one direction.

Definition at line 298 of file itkMLBSTrackingFilter.cpp.

template<int ShOrder = 6, int NumImageFeatures = 100>

virtual const char* itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::GetClassName ( ) const

virtual

Runtime information support.

template<int ShOrder = 6, int NumImageFeatures = 100>

virtual PolyDataType itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::GetFiberPolyData ( )

virtual

Output fibers.

template<int ShOrder, int NumImageFeatures>

vnl_vector_fixed< double, 3 > itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::GetNewDirection ( itk::Point< double, 3 > &  pos, vnl_vector_fixed< double, 3 > &  olddir  )

protected

Determine new direction by sample voting at the current position taking the last progression direction into account.

Definition at line 194 of file itkMLBSTrackingFilter.cpp.

References itk::OrientationDistributionFunction< TComponent, NOdfDirections >::GetDirection().

template<int ShOrder, int NumImageFeatures>

double itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::GetRandDouble ( double  min = -1, double  max = 1  )

protected

Definition at line 188 of file itkMLBSTrackingFilter.cpp.

References min().

template<int ShOrder, int NumImageFeatures>

bool itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::IsValidPosition ( itk::Point< double, 3 > &  pos )

protected

Are we outside of the mask image?

Definition at line 177 of file itkMLBSTrackingFilter.cpp.

template<int ShOrder = 6, int NumImageFeatures = 100>

static Pointer itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::New ( )

static

Method for creation through the object factory.

template<int ShOrder, int NumImageFeatures>

double itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::RoundToNearest ( double  num )

protected

Definition at line 65 of file itkMLBSTrackingFilter.cpp.

template<int ShOrder = 6, int NumImageFeatures = 100>

virtual void itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::SetAngularThreshold ( double  _arg )

virtual

Probabilities for directions with larger angular deviation from previous direction is set to 0.

template<int ShOrder = 6, int NumImageFeatures = 100>

virtual void itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::SetAposterioriCurvCheck ( bool  _arg )

virtual

Checks fiber curvature (angular deviation across 5mm) is larger than 30°. If yes, the streamline progression is stopped.

template<int ShOrder = 6, int NumImageFeatures = 100>

virtual void itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::SetAvoidStop ( bool  _arg )

virtual

Use additional sampling points to avoid premature streamline termination.

template<int ShOrder = 6, int NumImageFeatures = 100>

virtual void itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::SetDemoMode ( bool  _arg )

virtual

template<int ShOrder = 6, int NumImageFeatures = 100>

void itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::SetForestHandler ( mitk::TrackingForestHandler< ShOrder >  fh )

inline

Parameters

fh	Stores random forest classifier and performs actual classification

Definition at line 108 of file itkMLBSTrackingFilter.h.

References itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_ForestHandler.

template<int ShOrder = 6, int NumImageFeatures = 100>

virtual void itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::SetMaskImage ( ItkUcharImgType::Pointer  _arg )

virtual

Tracking is only performed inside of this mask image.

template<int ShOrder = 6, int NumImageFeatures = 100>

virtual void itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::SetMaxTractLength ( double  _arg )

virtual

Streamline progression stops if tract is longer than specified.

template<int ShOrder = 6, int NumImageFeatures = 100>

virtual void itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::SetMinTractLength ( double  _arg )

virtual

Shorter tracts are discarded.

template<int ShOrder = 6, int NumImageFeatures = 100>

virtual void itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::SetNumberOfSamples ( int  _arg )

virtual

Number of sampling points.

template<int ShOrder = 6, int NumImageFeatures = 100>

virtual void itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::SetRandomSampling ( bool  _arg )

virtual

If true, the sampling points are distributed randomly around the current position, not sphericall in the specified sampling distance.

template<int ShOrder = 6, int NumImageFeatures = 100>

virtual void itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::SetRemoveWmEndFibers ( bool  _arg )

virtual

Checks if fiber ending is located in the white matter. If this is the case, the streamline is discarded.

template<int ShOrder = 6, int NumImageFeatures = 100>

virtual void itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::SetSamplingDistance ( double  _arg )

virtual

Maximum distance of sampling points in mm.

template<int ShOrder = 6, int NumImageFeatures = 100>

virtual void itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::SetSeedImage ( ItkUcharImgType::Pointer  _arg )

virtual

Seeds are only placed inside of this mask.

template<int ShOrder = 6, int NumImageFeatures = 100>

virtual void itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::SetSeedsPerVoxel ( int  _arg )

virtual

One seed placed in the center of each voxel or multiple seeds randomly placed inside each voxel.

template<int ShOrder = 6, int NumImageFeatures = 100>

virtual void itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::SetStepSize ( double  _arg )

virtual

Integration step size in mm.

template<int ShOrder = 6, int NumImageFeatures = 100>

virtual void itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::SetStoppingRegions ( ItkUcharImgType::Pointer  _arg )

virtual

Streamlines entering a stopping region will stop immediately.

template<int ShOrder, int NumImageFeatures>

void itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::ThreadedGenerateData ( const InputImageRegionType &  outputRegionForThread, ThreadIdType  threadId  )

overrideprotected

Definition at line 438 of file itkMLBSTrackingFilter.cpp.

References MITK_INFO.

Member Data Documentation

template<int ShOrder = 6, int NumImageFeatures = 100>

bool itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_AbortTracking

Definition at line 84 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

mitk::PointSet::Pointer itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_AlternativePointset

Definition at line 89 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

double itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_AngularThreshold

protected

Definition at line 134 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

bool itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_AposterioriCurvCheck

protected

Definition at line 149 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

bool itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_AvoidStop

protected

Definition at line 151 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

bool itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_BuildFibersFinished

Definition at line 85 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

int itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_BuildFibersReady

Definition at line 86 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

vtkSmartPointer<vtkCellArray> itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_Cells

protected

Definition at line 131 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

bool itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_DemoMode

protected

Definition at line 153 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

std::chrono::time_point<std::chrono::system_clock> itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_EndTime

protected

Definition at line 165 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

PolyDataType itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_FiberPolyData

protected

Definition at line 129 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

mitk::TrackingForestHandler<ShOrder> itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_ForestHandler

protected

Definition at line 158 of file itkMLBSTrackingFilter.h.

Referenced by itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::SetForestHandler().

template<int ShOrder = 6, int NumImageFeatures = 100>

InputImageType::Pointer itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_InputImage

protected

Definition at line 159 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

ItkUcharImgType::Pointer itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_MaskImage

protected

Definition at line 147 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

int itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_MaxLength

protected

Definition at line 136 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

double itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_MaxTractLength

protected

Definition at line 138 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

double itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_MinTractLength

protected

Definition at line 137 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

SimpleFastMutexLock itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_Mutex

protected

Definition at line 144 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

int itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_NumberOfSamples

protected

Definition at line 142 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

volatile bool itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_PauseTracking

Definition at line 83 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

vtkSmartPointer<vtkPoints> itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_Points

protected

Definition at line 130 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

std::vector< PolyDataType > itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_PolyDataContainer

protected

Definition at line 162 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

bool itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_RandomSampling

protected

Definition at line 140 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

bool itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_RemoveWmEndFibers

protected

Definition at line 150 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

double itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_SamplingDistance

protected

Definition at line 141 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

mitk::PointSet::Pointer itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_SamplingPointset

Definition at line 88 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

ItkUcharImgType::Pointer itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_SeedImage

protected

Definition at line 146 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

int itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_SeedsPerVoxel

protected

Definition at line 139 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

std::chrono::time_point<std::chrono::system_clock> itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_StartTime

protected

Definition at line 164 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

double itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_StepSize

protected

Definition at line 135 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

volatile bool itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_Stop

Definition at line 87 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

ItkUcharImgType::Pointer itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_StoppingRegions

protected

Definition at line 145 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

int itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_Threads

protected

Definition at line 152 of file itkMLBSTrackingFilter.h.

template<int ShOrder = 6, int NumImageFeatures = 100>

BundleType itk::MLBSTrackingFilter< ShOrder, NumImageFeatures >::m_Tractogram

protected

Definition at line 132 of file itkMLBSTrackingFilter.h.

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The documentation for this class was generated from the following files:

• itkMLBSTrackingFilter.h
• itkMLBSTrackingFilter.cpp