DiffusionIVIMFit.cpp File Reference

#include "mitkCommandLineParser.h"
#include <mitkIOUtil.h>
#include <mitkDiffusionPropertyHelper.h>
#include <mitkImageCaster.h>
#include <itkDiffusionKurtosisReconstructionImageFilter.h>
#include "vnl/vnl_math.h"
#include "vnl/vnl_cost_function.h"
#include "vnl/vnl_least_squares_function.h"
#include "vnl/algo/vnl_lbfgsb.h"
#include "vnl/algo/vnl_lbfgs.h"
#include "vnl/algo/vnl_levenberg_marquardt.h"
#include <itkGaussianBlurImageFunction.h>
#include <itkUnaryFunctorImageFilter.h>
#include <itkImageFileWriter.h>
#include <itkVectorIndexSelectionCastImageFilter.h>
#include <itkComposeImageFilter.h>
#include <itkDiscreteGaussianImageFilter.h>

Go to the source code of this file.

Typedefs
typedef mitk::DiffusionPropertyHelper	DPH

Functions
DPH::ImageType::Pointer	GetBlurredVectorImage (DPH::ImageType::Pointer vectorImage, double sigma)
void	KurtosisMapComputation (mitk::Image::Pointer input, std::string output_prefix)
int	main (int argc, char *argv[])

Typedef Documentation

typedef mitk::DiffusionPropertyHelper DPH

Definition at line 33 of file DiffusionIVIMFit.cpp.

Function Documentation

DPH::ImageType::Pointer GetBlurredVectorImage	(	DPH::ImageType::Pointer	vectorImage,
		double	sigma
	)

Definition at line 44 of file DiffusionIVIMFit.cpp.

References mitkThrow, and mitk::New().

Referenced by KurtosisMapComputation().

void KurtosisMapComputation	(	mitk::Image::Pointer	input,
		std::string	output_prefix
	)

Definition at line 92 of file DiffusionIVIMFit.cpp.

References mitk::CastToItkImage(), GetBlurredVectorImage(), mitk::DiffusionPropertyHelper::GetGradientContainer(), mitk::DiffusionPropertyHelper::GetReferenceBValue(), mitkThrow, mitk::New(), mitk::Image::New(), and mitk::IOUtil::Save().

Referenced by main().

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 151 of file DiffusionIVIMFit.cpp.

References mitkCommandLineParser::addArgument(), us::any_cast(), mitkCommandLineParser::InputFile, mitk::DiffusionPropertyHelper::IsDiffusionWeightedImage(), KurtosisMapComputation(), mitk::IOUtil::LoadImage(), MITK_ERROR, MITK_INFO, mitkCommandLineParser::parseArguments(), mitkCommandLineParser::setArgumentPrefix(), mitkCommandLineParser::setCategory(), mitkCommandLineParser::setContributor(), mitkCommandLineParser::setDescription(), mitkCommandLineParser::setTitle(), and mitkCommandLineParser::String.